2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
3 * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
11 * Jalview is distributed in the hope that it will be useful, but
12 * WITHOUT ANY WARRANTY; without even the implied warranty
13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
14 * PURPOSE. See the GNU General Public License for more details.
16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
20 import jalview.bin.Cache;
21 import jalview.jbgui.GWsPreferences;
22 import jalview.ws.jws2.Jws2Discoverer;
23 import jalview.ws.rest.RestServiceDescription;
25 import java.awt.BorderLayout;
26 import java.awt.Color;
27 import java.awt.Component;
28 import java.awt.Dimension;
29 import java.awt.event.ActionEvent;
30 import java.awt.event.ActionListener;
32 import java.util.Vector;
34 import javax.swing.JLabel;
35 import javax.swing.JOptionPane;
36 import javax.swing.JPanel;
37 import javax.swing.JTable;
38 import javax.swing.JTextField;
39 import javax.swing.table.AbstractTableModel;
40 import javax.swing.table.TableCellRenderer;
42 public class WsPreferences extends GWsPreferences
46 public WsPreferences()
49 initFromPreferences();
52 Vector<String> wsUrls, oldUrls, rsbsUrls, oldRsbsUrls;
54 private boolean needWsMenuUpdate;
56 private boolean oldJws1, oldJws2, oldIndexByHost, oldIndexByType,
57 oldEnfin, oldWsWarning;
59 private void initFromPreferences()
62 wsUrls = jalview.ws.jws2.Jws2Discoverer.getServiceUrls();
65 oldUrls = new Vector<String>(wsUrls);
70 wsUrls = new Vector<String>();
72 wsList.setDefaultRenderer(Integer.class, new JabaWSStatusRenderer());
73 wsList.setAutoResizeMode(JTable.AUTO_RESIZE_ALL_COLUMNS);
75 rsbsUrls = jalview.ws.rest.RestClient.getRsbsDescriptions();
78 oldRsbsUrls = new Vector<String>(rsbsUrls);
83 rsbsUrls = new Vector<String>();
86 enableEnfinServices.setSelected(oldEnfin = Cache.getDefault(
87 "SHOW_ENFIN_SERVICES", true));
88 enableEnfinServices.addActionListener(updateAction);
89 enableJws2Services.setSelected(oldJws2 = Cache.getDefault(
90 "SHOW_JWS2_SERVICES", true));
91 enableJws2Services.addActionListener(updateAction);
92 indexByHost.setSelected(oldIndexByHost = Cache.getDefault(
93 "WSMENU_BYHOST", false));
94 indexByHost.addActionListener(updateAction);
95 indexByType.setSelected(oldIndexByType = Cache.getDefault(
96 "WSMENU_BYTYPE", false));
97 indexByType.addActionListener(updateAction);
98 displayWsWarning.setSelected(oldWsWarning = Cache.getDefault(
99 "SHOW_WSDISCOVERY_ERRORS", true));
102 ActionListener updateAction = new ActionListener()
106 public void actionPerformed(ActionEvent e)
113 private void updateList() {
114 Object tdat[][] = new Object[wsUrls.size()][2];
116 for (String url : wsUrls)
118 int status = Jws2Discoverer.getDiscoverer().getServerStatusFor(url);
119 tdat[r][1]=new Integer(status);
123 wsList.setModel(new WsUrlTableModel(tdat));
124 wsList.getColumn("Status").setMinWidth(10);
126 private class JabaWSStatusRenderer extends JPanel implements TableCellRenderer
128 public JabaWSStatusRenderer()
131 setMinimumSize(new Dimension(10,10));
136 * render an Integer reflecting service status as a colour and symbol
140 public Component getTableCellRendererComponent(JTable arg0,
141 Object status, boolean isSelected, boolean hasFocus, int row, int column)
144 String t=new String("");
145 switch (((Integer) status).intValue())
148 // cb.setSelected(true);
153 // cb.setSelected(true);
158 //cb.setSelected(false);
163 //cb.setSelected(false);
174 private class WsUrlTableModel extends AbstractTableModel {
176 private Object[][] data;
177 public WsUrlTableModel(Object[][] tdat)
183 public int getColumnCount()
188 public String getColumnName(int column)
194 return "Service URL";
197 public int getRowCount()
206 public java.lang.Class<?> getColumnClass(int columnIndex) {
207 return getValueAt(0, columnIndex).getClass();
210 public Object getValueAt(int rowIndex, int columnIndex)
212 return data[rowIndex][columnIndex];
216 private void updateRsbsList()
218 sbrsList.setListData(rsbsUrls);
221 private void updateServiceList()
223 jalview.ws.jws2.Jws2Discoverer.setServiceUrls(wsUrls);
226 private void updateRsbsServiceList()
228 jalview.ws.rest.RestClient.setRsbsServices(rsbsUrls);
235 * jalview.jbgui.GWsPreferences#deleteWsUrl_actionPerformed(java.awt.event
239 protected void deleteWsUrl_actionPerformed(ActionEvent e)
241 int sel = wsList.getSelectedRow();
244 wsUrls.removeElementAt(sel);
253 * @see jalview.jbgui.GWsPreferences#editWsUrl_actionPerformed(java.awt.event.
257 protected void editWsUrl_actionPerformed(ActionEvent e)
259 int sel = wsList.getSelectedRow();
262 String url = editUrl(wsUrls.elementAt(sel), "Edit JABAWS URL");
265 int present = wsUrls.indexOf(url);
269 wsUrls.setElementAt(url, sel);
276 wsUrls.removeElementAt(sel);
285 protected void newSbrsUrl_actionPerformed(ActionEvent e)
287 RestServiceEditorPane rse = new RestServiceEditorPane();
288 rse.showDialog("Add a new Simple Bioinformatics Rest Service");
289 String rservice = rse.getEditedRestService();
290 if (rservice != null && !rsbsUrls.contains(rservice))
292 rsbsUrls.add(rservice);
299 protected void editSbrsUrl_actionPerformed(ActionEvent e)
301 int sel = sbrsList.getSelectedIndex();
304 RestServiceEditorPane rse = new RestServiceEditorPane(
305 new RestServiceDescription(rsbsUrls.elementAt(sel)));
306 rse.showDialog("Edit Simple Bioinformatics Rest Service entry");
307 String rservice = rse.getEditedRestService();
308 if (rservice != null)
310 int present = rsbsUrls.indexOf(rservice);
314 rsbsUrls.setElementAt(rservice, sel);
321 rsbsUrls.removeElementAt(sel);
330 void updateWsMenuConfig(boolean old)
334 if (oldUrls != wsUrls
335 || (wsUrls != null && oldUrls != null && !wsUrls
340 wsUrls = (oldUrls == null) ? null : new Vector(oldUrls);
341 if (oldRsbsUrls != rsbsUrls
342 || (rsbsUrls != null && oldRsbsUrls != null && !oldRsbsUrls
347 oldRsbsUrls = (oldRsbsUrls == null) ? null : new Vector(oldRsbsUrls);
354 "SHOW_ENFIN_SERVICES",
356 old ? oldEnfin : enableEnfinServices.isSelected())
359 "SHOW_JWS2_SERVICES",
360 Boolean.valueOf(old ? oldJws2 : enableJws2Services.isSelected())
364 Boolean.valueOf(old ? oldIndexByHost : indexByHost.isSelected())
368 Boolean.valueOf(old ? oldIndexByType : indexByType.isSelected())
372 "SHOW_WSDISCOVERY_ERRORS",
374 old ? oldWsWarning : displayWsWarning.isSelected())
377 updateRsbsServiceList();
384 * jalview.jbgui.GWsPreferences#moveWsUrlDown_actionPerformed(java.awt.event
388 protected void moveWsUrlDown_actionPerformed(ActionEvent e)
390 int p = wsList.getSelectedRow();
391 if (p > -1 && p < wsUrls.size() - 1)
393 String t = wsUrls.get(p + 1);
394 wsUrls.setElementAt(wsUrls.elementAt(p), p + 1);
395 wsUrls.setElementAt(t, p);
397 wsList.getSelectionModel().setSelectionInterval(p+1,p + 1);
406 * jalview.jbgui.GWsPreferences#moveWsUrlUp_actionPerformed(java.awt.event
410 protected void moveWsUrlUp_actionPerformed(ActionEvent e)
412 int p = wsList.getSelectedRow();
415 String t = wsUrls.get(p - 1);
416 wsUrls.setElementAt(wsUrls.elementAt(p), p - 1);
417 wsUrls.setElementAt(t, p);
419 wsList.getSelectionModel().setSelectionInterval(p-1,p - 1);
424 private String editUrl(String initUrl, String title)
426 String url = initUrl;
432 JTextField urltf = new JTextField(url, 40);
433 JPanel panel = new JPanel(new BorderLayout());
434 JPanel pane12 = new JPanel(new BorderLayout());
435 pane12.add(new JLabel("URL: "), BorderLayout.CENTER);
436 pane12.add(urltf, BorderLayout.EAST);
437 panel.add(pane12, BorderLayout.NORTH);
438 boolean valid = false;
439 int resp = JOptionPane.CANCEL_OPTION;
441 && (resp = JOptionPane.showInternalConfirmDialog(
442 Desktop.desktop, panel, title,
443 JOptionPane.OK_CANCEL_OPTION)) == JOptionPane.OK_OPTION)
447 // TODO: do a better job of checking that the url is a valid discovery
448 // URL for web services.
449 String tx = urltf.getText().trim();
450 while (tx.length() > 0 && tx.lastIndexOf('/') == tx.length() - 1)
452 tx = tx.substring(0, tx.length() - 1);
457 } catch (Exception e)
460 JOptionPane.showInternalMessageDialog(Desktop.desktop,
464 if (valid && resp == JOptionPane.OK_OPTION)
466 int validate = JOptionPane
467 .showInternalConfirmDialog(
469 "Validate JabaWS Server ?\n(Look in console output for results)",
470 "Test Server?", JOptionPane.YES_NO_OPTION);
471 if (validate == JOptionPane.OK_OPTION)
473 if (jalview.ws.jws2.Jws2Discoverer.testServiceUrl(foo))
475 return foo.toString();
480 .showInternalMessageDialog(
482 "Service did not pass validation.\nCheck the Jalview Console for more details.");
487 // just return the URL anyway
488 return foo.toString();
497 * @see jalview.jbgui.GWsPreferences#newWsUrl_actionPerformed(java.awt.event.
501 protected void newWsUrl_actionPerformed(ActionEvent e)
503 String url = editUrl(null, "Add new JABAWS URL");
506 if (!wsUrls.contains(url))
508 int selind = wsList.getSelectedRow();
511 wsUrls.insertElementAt(url, selind);
515 wsUrls.addElement(url);
526 * @see jalview.jbgui.GWsPreferences#refreshWs_actionPerformed(java.awt.event.
530 protected void refreshWs_actionPerformed(ActionEvent e)
532 new Thread(new Runnable()
538 lastrefresh = update - 1;
539 updateWsMenuConfig(false);
547 * Refresh the web services menus - but only if there has been a change in the
548 * configuration (indicated by update!=lastrefresh)
550 * @param showProgress
551 * show progress in dialog or on desktop
553 protected void refreshWsMenu(boolean showProgress)
557 new Thread(new Runnable()
562 progressBar.setVisible(true);
564 progressBar.setIndeterminate(true);
565 if (lastrefresh != update)
567 lastrefresh = update;
568 Desktop.instance.startServiceDiscovery(true); // wait around for all
569 // threads to complete
573 progressBar.setIndeterminate(false);
574 progressBar.setVisible(false);
582 new Thread(new Runnable()
587 long ct = System.currentTimeMillis();
588 Desktop.instance.setProgressBar("Refreshing Web Service Menus",
590 if (lastrefresh != update)
592 lastrefresh = update;
593 Desktop.instance.startServiceDiscovery(true);
596 Desktop.instance.setProgressBar(null, ct);
604 * state counters for ensuring that updates only happen if config has changed.
606 private long update = 0, lastrefresh = 0;
612 * jalview.jbgui.GWsPreferences#resetWs_actionPerformed(java.awt.event.ActionEvent
616 protected void resetWs_actionPerformed(ActionEvent e)
618 jalview.ws.jws2.Jws2Discoverer.setServiceUrls(null);
619 Vector nwsUrls = jalview.ws.jws2.Jws2Discoverer.getServiceUrls();
620 if (!wsUrls.equals(nwsUrls))
627 updateAndRefreshWsMenuConfig(true);
630 protected void ok_ActionPerformed(ActionEvent e)
632 // update everything regardless.
633 updateAndRefreshWsMenuConfig(false);
636 public void updateAndRefreshWsMenuConfig(
637 final boolean showProgressInDialog)
639 new Thread(new Runnable()
644 updateWsMenuConfig(false);
645 refreshWsMenu(showProgressInDialog);