2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 package jalview.jbgui;
23 import jalview.api.AlignmentViewPanel;
24 import jalview.bin.Jalview;
25 import jalview.io.FileFormatException;
26 import jalview.util.MessageManager;
27 import jalview.util.Platform;
29 import java.awt.FlowLayout;
30 import java.awt.Toolkit;
31 import java.awt.event.ActionEvent;
32 import java.awt.event.ActionListener;
34 import javax.swing.JCheckBoxMenuItem;
35 import javax.swing.JFrame;
36 import javax.swing.JMenu;
37 import javax.swing.JMenuBar;
38 import javax.swing.JMenuItem;
41 * abstract class super to jalview.gui.Desktop
44 @SuppressWarnings("serial")
45 public abstract class GDesktop extends JFrame
48 public JMenu windowMenu = new JMenu(); // BH 2019.05.07 was static
50 JMenuBar desktopMenubar = new JMenuBar();
52 JMenu FileMenu = new JMenu();
54 JMenu HelpMenu = new JMenu();
56 protected JMenu VamsasMenu = new JMenu();
58 protected JMenu VamsasStMenu = new JMenu();
60 JMenuItem inputLocalFileMenuItem = new JMenuItem();
62 JMenuItem inputURLMenuItem = new JMenuItem();
64 JMenuItem inputTextboxMenuItem = new JMenuItem();
66 JMenuItem quit = new JMenuItem();
68 JMenuItem aboutMenuItem = new JMenuItem();
70 JMenuItem documentationMenuItem = new JMenuItem();
72 FlowLayout flowLayout1 = new FlowLayout();
74 protected JMenu toolsMenu = new JMenu();
76 JMenuItem preferences = new JMenuItem();
78 JMenuItem saveState = new JMenuItem();
80 JMenuItem saveAsState = new JMenuItem();
82 JMenuItem loadState = new JMenuItem();
84 JMenu inputMenu = new JMenu();
86 protected JMenuItem vamsasStart = new JMenuItem();
88 protected JMenuItem vamsasImport = new JMenuItem();
90 protected JMenuItem vamsasSave = new JMenuItem();
92 JMenuItem inputSequence = new JMenuItem();
94 protected JMenuItem vamsasStop = new JMenuItem();
96 JMenuItem closeAll = new JMenuItem();
98 JMenuItem raiseRelated = new JMenuItem();
100 JMenuItem minimizeAssociated = new JMenuItem();
102 protected JCheckBoxMenuItem showMemusage = new JCheckBoxMenuItem();
104 JMenuItem garbageCollect = new JMenuItem();
106 protected JMenuItem groovyShell;
108 protected JCheckBoxMenuItem experimentalFeatures;
110 protected JCheckBoxMenuItem showConsole = new JCheckBoxMenuItem();
112 public JCheckBoxMenuItem showNews = new JCheckBoxMenuItem();
114 protected JMenuItem snapShotWindow = new JMenuItem();
117 * Creates a new GDesktop object.
124 this.setJMenuBar(desktopMenubar);
125 } catch (Exception e)
130 if (Platform.allowMnemonics())
132 //BH was !Platform.isAMacAndNotJS()) i.e. "JS or not Mac"
133 // but here we want just not a Mac, period, right?
134 FileMenu.setMnemonic('F');
135 inputLocalFileMenuItem.setMnemonic('L');
136 VamsasMenu.setMnemonic('V');
137 inputURLMenuItem.setMnemonic('U');
138 inputTextboxMenuItem.setMnemonic('C');
139 quit.setMnemonic('Q');
140 saveState.setMnemonic('S');
141 loadState.setMnemonic('L');
142 inputMenu.setMnemonic('I');
152 private void jbInit() throws Exception
154 setName(Jalview.getAppID("desktop"));
155 FileMenu.setText(MessageManager.getString("action.file"));
156 HelpMenu.setText(MessageManager.getString("action.help"));
157 VamsasMenu.setText("Vamsas");
158 VamsasMenu.setToolTipText(MessageManager
159 .getString("label.share_data_vamsas_applications"));
160 VamsasStMenu.setText(MessageManager.getString("label.connect_to"));
161 VamsasStMenu.setToolTipText(
162 MessageManager.getString("label.join_existing_vamsas_session"));
163 inputLocalFileMenuItem
164 .setText(MessageManager.getString("label.load_tree_from_file"));
165 inputLocalFileMenuItem.setAccelerator(
166 javax.swing.KeyStroke.getKeyStroke(java.awt.event.KeyEvent.VK_O,
167 Toolkit.getDefaultToolkit().getMenuShortcutKeyMask(),
169 inputLocalFileMenuItem
170 .addActionListener(new java.awt.event.ActionListener()
173 public void actionPerformed(ActionEvent e)
175 inputLocalFileMenuItem_actionPerformed(null);
178 inputURLMenuItem.setText(MessageManager.getString("label.from_url"));
179 inputURLMenuItem.addActionListener(new java.awt.event.ActionListener()
182 public void actionPerformed(ActionEvent e)
186 inputURLMenuItem_actionPerformed(null);
187 } catch (FileFormatException e1)
189 System.err.println("Error loading from URL: " + e1.getMessage());
194 .setText(MessageManager.getString("label.from_textbox"));
196 .addActionListener(new java.awt.event.ActionListener()
199 public void actionPerformed(ActionEvent e)
201 inputTextboxMenuItem_actionPerformed(null);
204 quit.setText(MessageManager.getString("action.quit"));
205 quit.addActionListener(new java.awt.event.ActionListener()
208 public void actionPerformed(ActionEvent e)
213 aboutMenuItem.setText(MessageManager.getString("label.about"));
214 aboutMenuItem.addActionListener(new java.awt.event.ActionListener()
217 public void actionPerformed(ActionEvent e)
219 aboutMenuItem_actionPerformed(e);
222 documentationMenuItem
223 .setText(MessageManager.getString("label.documentation"));
224 documentationMenuItem.setAccelerator(javax.swing.KeyStroke
225 .getKeyStroke(java.awt.event.KeyEvent.VK_F1, 0, false));
226 documentationMenuItem
227 .addActionListener(new java.awt.event.ActionListener()
230 public void actionPerformed(ActionEvent e)
232 documentationMenuItem_actionPerformed();
235 this.getContentPane().setLayout(flowLayout1);
236 windowMenu.setText(MessageManager.getString("label.window"));
237 preferences.setText(MessageManager.getString("label.preferences"));
238 preferences.addActionListener(new ActionListener()
241 public void actionPerformed(ActionEvent e)
243 preferences_actionPerformed(e);
246 toolsMenu.setText(MessageManager.getString("label.tools"));
247 saveState.setText(MessageManager.getString("action.save_project"));
248 saveState.addActionListener(new ActionListener()
251 public void actionPerformed(ActionEvent e)
253 saveState_actionPerformed();
256 saveAsState.setText(MessageManager.getString("action.save_project_as"));
257 saveAsState.addActionListener(new ActionListener()
260 public void actionPerformed(ActionEvent e)
262 saveAsState_actionPerformed(e);
265 loadState.setText(MessageManager.getString("action.load_project"));
266 loadState.addActionListener(new ActionListener()
269 public void actionPerformed(ActionEvent e)
271 loadState_actionPerformed();
274 inputMenu.setText(MessageManager.getString("label.input_alignment"));
276 .setText(MessageManager.getString("label.new_vamsas_session"));
277 vamsasStart.setVisible(false);
278 vamsasStart.addActionListener(new ActionListener()
281 public void actionPerformed(ActionEvent e)
283 vamsasStart_actionPerformed(e);
286 vamsasImport.setText(
287 MessageManager.getString("action.load_vamsas_session"));
288 vamsasImport.setVisible(false);
289 vamsasImport.addActionListener(new ActionListener()
292 public void actionPerformed(ActionEvent e)
294 vamsasImport_actionPerformed(e);
298 MessageManager.getString("action.save_vamsas_session"));
299 vamsasSave.setVisible(false);
300 vamsasSave.addActionListener(new ActionListener()
303 public void actionPerformed(ActionEvent e)
305 vamsasSave_actionPerformed(e);
309 .setText(MessageManager.getString("action.fetch_sequences"));
310 inputSequence.addActionListener(new ActionListener()
313 public void actionPerformed(ActionEvent e)
315 inputSequence_actionPerformed(e);
319 .setText(MessageManager.getString("label.stop_vamsas_session"));
320 vamsasStop.setVisible(false);
321 vamsasStop.addActionListener(new ActionListener()
324 public void actionPerformed(ActionEvent e)
326 vamsasStop_actionPerformed(e);
329 closeAll.setText(MessageManager.getString("action.close_all"));
330 closeAll.addActionListener(new ActionListener()
333 public void actionPerformed(ActionEvent e)
335 closeAll_actionPerformed(e);
338 raiseRelated.setText(
339 MessageManager.getString("action.raise_associated_windows"));
340 raiseRelated.addActionListener(new ActionListener()
343 public void actionPerformed(ActionEvent e)
345 raiseRelated_actionPerformed(e);
348 minimizeAssociated.setText(
349 MessageManager.getString("action.minimize_associated_windows"));
350 minimizeAssociated.addActionListener(new ActionListener()
353 public void actionPerformed(ActionEvent e)
355 minimizeAssociated_actionPerformed(e);
359 .setText(MessageManager.getString("label.collect_garbage"));
360 garbageCollect.addActionListener(new ActionListener()
363 public void actionPerformed(ActionEvent e)
365 garbageCollect_actionPerformed(e);
369 .setText(MessageManager.getString("label.show_memory_usage"));
370 showMemusage.addActionListener(new ActionListener()
373 public void actionPerformed(ActionEvent e)
375 showMemusage_actionPerformed(e);
379 .setText(MessageManager.getString("label.show_java_console"));
380 showConsole.addActionListener(new ActionListener()
383 public void actionPerformed(ActionEvent e)
385 showConsole_actionPerformed(e);
388 showNews.setText(MessageManager.getString("label.show_jalview_news"));
389 showNews.addActionListener(new ActionListener()
392 public void actionPerformed(ActionEvent e)
394 showNews_actionPerformed(e);
397 groovyShell = new JMenuItem();
398 groovyShell.setText(MessageManager.getString("label.groovy_console"));
399 groovyShell.addActionListener(new ActionListener()
402 public void actionPerformed(ActionEvent e)
404 groovyShell_actionPerformed();
407 experimentalFeatures = new JCheckBoxMenuItem();
409 .setText(MessageManager.getString("label.show_experimental"));
410 experimentalFeatures.setToolTipText(
411 MessageManager.getString("label.show_experimental_tip"));
412 experimentalFeatures.addActionListener(new ActionListener()
415 public void actionPerformed(ActionEvent e)
417 showExperimental_actionPerformed(experimentalFeatures.isSelected());
421 snapShotWindow.setText(MessageManager.getString("label.take_snapshot"));
422 snapShotWindow.addActionListener(new ActionListener()
425 public void actionPerformed(ActionEvent e)
427 snapShotWindow_actionPerformed(e);
431 desktopMenubar.add(FileMenu);
432 desktopMenubar.add(toolsMenu);
433 VamsasMenu.setVisible(false);
434 desktopMenubar.add(VamsasMenu);
435 desktopMenubar.add(HelpMenu);
436 desktopMenubar.add(windowMenu);
437 FileMenu.add(inputMenu);
438 FileMenu.add(inputSequence);
439 FileMenu.addSeparator();
440 FileMenu.add(saveState);
441 FileMenu.add(saveAsState);
442 FileMenu.add(loadState);
443 FileMenu.addSeparator();
445 HelpMenu.add(aboutMenuItem);
446 HelpMenu.add(documentationMenuItem);
447 VamsasMenu.add(VamsasStMenu);
448 VamsasStMenu.setVisible(false);
449 VamsasMenu.add(vamsasStart);
450 VamsasMenu.add(vamsasImport);
451 VamsasMenu.add(vamsasSave);
452 VamsasMenu.add(vamsasStop);
453 toolsMenu.add(preferences);
454 if (!Platform.isJS())
456 toolsMenu.add(showMemusage);
457 toolsMenu.add(showConsole);
459 if (!Platform.isJS())
461 toolsMenu.add(showNews);
462 toolsMenu.add(garbageCollect);
463 toolsMenu.add(groovyShell);
465 toolsMenu.add(experimentalFeatures);
466 // toolsMenu.add(snapShotWindow);
467 inputMenu.add(inputLocalFileMenuItem);
468 inputMenu.add(inputURLMenuItem);
469 inputMenu.add(inputTextboxMenuItem);
470 windowMenu.add(closeAll);
471 windowMenu.add(raiseRelated);
472 windowMenu.add(minimizeAssociated);
473 windowMenu.addSeparator();
474 // inputMenu.add(vamsasLoad);
477 protected void showExperimental_actionPerformed(boolean selected)
481 protected void groovyShell_actionPerformed()
485 protected void snapShotWindow_actionPerformed(ActionEvent e)
487 // TODO Auto-generated method stub
491 protected void showConsole_actionPerformed(ActionEvent e)
493 // TODO Auto-generated method stub
497 protected void showNews_actionPerformed(ActionEvent e)
499 // TODO Auto-generated method stub
503 protected void showMemusage_actionPerformed(ActionEvent e)
505 // TODO Auto-generated method stub
509 protected void garbageCollect_actionPerformed(ActionEvent e)
511 // TODO Auto-generated method stub
515 protected void vamsasStMenu_actionPerformed()
519 public void vamsasSave_actionPerformed(ActionEvent e)
529 protected void inputLocalFileMenuItem_actionPerformed(
530 jalview.gui.AlignViewport av)
539 * @throws FileFormatException
541 protected void inputURLMenuItem_actionPerformed(
542 jalview.gui.AlignViewport av) throws FileFormatException
552 protected void inputTextboxMenuItem_actionPerformed(
553 AlignmentViewPanel avp)
560 protected void quit()
570 protected void aboutMenuItem_actionPerformed(ActionEvent e)
574 protected void documentationMenuItem_actionPerformed()
584 protected void preferences_actionPerformed(ActionEvent e)
594 public void saveState_actionPerformed()
598 public void saveAsState_actionPerformed(ActionEvent e)
608 public void loadState_actionPerformed()
618 public void loadJalviewAlign_actionPerformed(ActionEvent e)
622 public void vamsasStart_actionPerformed(ActionEvent e)
627 public void inputSequence_actionPerformed(ActionEvent e)
632 public void vamsasStop_actionPerformed(ActionEvent e)
637 public void closeAll_actionPerformed(ActionEvent e)
642 public void raiseRelated_actionPerformed(ActionEvent e)
647 public void minimizeAssociated_actionPerformed(ActionEvent e)
652 public void vamsasImport_actionPerformed(ActionEvent e)