2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 package jalview.jbgui;
23 import jalview.api.AlignmentViewPanel;
24 import jalview.bin.Jalview;
25 import jalview.io.FileFormatException;
26 import jalview.util.MessageManager;
27 import jalview.util.Platform;
29 import java.awt.FlowLayout;
30 import java.awt.Toolkit;
31 import java.awt.event.ActionEvent;
32 import java.awt.event.ActionListener;
34 import javax.swing.JCheckBoxMenuItem;
35 import javax.swing.JFrame;
36 import javax.swing.JMenu;
37 import javax.swing.JMenuBar;
38 import javax.swing.JMenuItem;
46 public class GDesktop extends JFrame
49 public static javax.swing.JTabbedPane createTabbedPane()
51 // now just always return JTabbedPane
52 return new javax.swing.JTabbedPane();
53 // // BH 2018 coercing jalview.jbgui.swing.JTabbedPane() for now
54 // if (/** @j2sNative false && */
58 // return new javax.swing.JTabbedPane();
61 // return (javax.swing.JTabbedPane) (Object) new jalview.jbgui.swing.JTabbedPane();
65 protected static JMenu windowMenu = new JMenu();
67 JMenuBar desktopMenubar = new JMenuBar();
69 JMenu FileMenu = new JMenu();
71 JMenu HelpMenu = new JMenu();
73 protected JMenu VamsasMenu = new JMenu();
75 protected JMenu VamsasStMenu = new JMenu();
77 JMenuItem inputLocalFileMenuItem = new JMenuItem();
79 JMenuItem inputURLMenuItem = new JMenuItem();
81 JMenuItem inputTextboxMenuItem = new JMenuItem();
83 JMenuItem quit = new JMenuItem();
85 JMenuItem aboutMenuItem = new JMenuItem();
87 JMenuItem documentationMenuItem = new JMenuItem();
89 FlowLayout flowLayout1 = new FlowLayout();
91 protected JMenu toolsMenu = new JMenu();
93 JMenuItem preferences = new JMenuItem();
95 JMenuItem saveState = new JMenuItem();
97 JMenuItem loadState = new JMenuItem();
99 JMenu inputMenu = new JMenu();
101 protected JMenuItem vamsasStart = new JMenuItem();
103 protected JMenuItem vamsasImport = new JMenuItem();
105 protected JMenuItem vamsasSave = new JMenuItem();
107 JMenuItem inputSequence = new JMenuItem();
109 protected JMenuItem vamsasStop = new JMenuItem();
111 JMenuItem closeAll = new JMenuItem();
113 JMenuItem raiseRelated = new JMenuItem();
115 JMenuItem minimizeAssociated = new JMenuItem();
117 protected JCheckBoxMenuItem showMemusage = new JCheckBoxMenuItem();
119 JMenuItem garbageCollect = new JMenuItem();
121 protected JMenuItem groovyShell;
123 protected JCheckBoxMenuItem experimentalFeatures;
125 protected JCheckBoxMenuItem showConsole = new JCheckBoxMenuItem();
127 protected JCheckBoxMenuItem showNews = new JCheckBoxMenuItem();
129 protected JMenuItem snapShotWindow = new JMenuItem();
132 * Creates a new GDesktop object.
140 this.setJMenuBar(desktopMenubar);
141 } catch (Exception e)
146 if (!Platform.isAMac())
148 FileMenu.setMnemonic('F');
149 inputLocalFileMenuItem.setMnemonic('L');
150 VamsasMenu.setMnemonic('V');
151 inputURLMenuItem.setMnemonic('U');
152 inputTextboxMenuItem.setMnemonic('C');
153 quit.setMnemonic('Q');
154 saveState.setMnemonic('S');
155 loadState.setMnemonic('L');
156 inputMenu.setMnemonic('I');
166 private void jbInit() throws Exception
169 FileMenu.setText(MessageManager.getString("action.file"));
170 HelpMenu.setText(MessageManager.getString("action.help"));
171 VamsasMenu.setText("Vamsas");
172 VamsasMenu.setToolTipText(MessageManager
173 .getString("label.share_data_vamsas_applications"));
174 VamsasStMenu.setText(MessageManager.getString("label.connect_to"));
175 VamsasStMenu.setToolTipText(
176 MessageManager.getString("label.join_existing_vamsas_session"));
177 inputLocalFileMenuItem
178 .setText(MessageManager.getString("label.load_tree_from_file"));
179 inputLocalFileMenuItem.setAccelerator(
180 javax.swing.KeyStroke.getKeyStroke(java.awt.event.KeyEvent.VK_O,
181 Toolkit.getDefaultToolkit().getMenuShortcutKeyMask(),
183 inputLocalFileMenuItem
184 .addActionListener(new java.awt.event.ActionListener()
187 public void actionPerformed(ActionEvent e)
189 inputLocalFileMenuItem_actionPerformed(null);
192 inputURLMenuItem.setText(MessageManager.getString("label.from_url"));
193 inputURLMenuItem.addActionListener(new java.awt.event.ActionListener()
196 public void actionPerformed(ActionEvent e)
200 inputURLMenuItem_actionPerformed(null);
201 } catch (FileFormatException e1)
203 System.err.println("Error loading from URL: " + e1.getMessage());
208 .setText(MessageManager.getString("label.from_textbox"));
210 .addActionListener(new java.awt.event.ActionListener()
213 public void actionPerformed(ActionEvent e)
215 inputTextboxMenuItem_actionPerformed(null);
218 quit.setText(MessageManager.getString("action.quit"));
219 quit.addActionListener(new java.awt.event.ActionListener()
222 public void actionPerformed(ActionEvent e)
227 aboutMenuItem.setText(MessageManager.getString("label.about"));
228 aboutMenuItem.addActionListener(new java.awt.event.ActionListener()
231 public void actionPerformed(ActionEvent e)
233 aboutMenuItem_actionPerformed(e);
236 documentationMenuItem
237 .setText(MessageManager.getString("label.documentation"));
238 documentationMenuItem.setAccelerator(javax.swing.KeyStroke
239 .getKeyStroke(java.awt.event.KeyEvent.VK_F1, 0, false));
240 documentationMenuItem
241 .addActionListener(new java.awt.event.ActionListener()
244 public void actionPerformed(ActionEvent e)
246 documentationMenuItem_actionPerformed();
249 this.getContentPane().setLayout(flowLayout1);
250 windowMenu.setText(MessageManager.getString("label.window"));
251 preferences.setText(MessageManager.getString("label.preferences"));
252 preferences.addActionListener(new ActionListener()
255 public void actionPerformed(ActionEvent e)
257 preferences_actionPerformed(e);
260 toolsMenu.setText(MessageManager.getString("label.tools"));
261 saveState.setText(MessageManager.getString("action.save_project"));
262 saveState.addActionListener(new ActionListener()
265 public void actionPerformed(ActionEvent e)
267 saveState_actionPerformed();
270 loadState.setText(MessageManager.getString("action.load_project"));
271 loadState.addActionListener(new ActionListener()
274 public void actionPerformed(ActionEvent e)
276 loadState_actionPerformed();
279 inputMenu.setText(MessageManager.getString("label.input_alignment"));
281 .setText(MessageManager.getString("label.new_vamsas_session"));
282 vamsasStart.setVisible(false);
283 vamsasStart.addActionListener(new ActionListener()
286 public void actionPerformed(ActionEvent e)
288 vamsasStart_actionPerformed(e);
291 vamsasImport.setText(
292 MessageManager.getString("action.load_vamsas_session"));
293 vamsasImport.setVisible(false);
294 vamsasImport.addActionListener(new ActionListener()
297 public void actionPerformed(ActionEvent e)
299 vamsasImport_actionPerformed(e);
303 MessageManager.getString("action.save_vamsas_session"));
304 vamsasSave.setVisible(false);
305 vamsasSave.addActionListener(new ActionListener()
308 public void actionPerformed(ActionEvent e)
310 vamsasSave_actionPerformed(e);
314 .setText(MessageManager.getString("action.fetch_sequences"));
315 inputSequence.addActionListener(new ActionListener()
318 public void actionPerformed(ActionEvent e)
320 inputSequence_actionPerformed(e);
324 .setText(MessageManager.getString("label.stop_vamsas_session"));
325 vamsasStop.setVisible(false);
326 vamsasStop.addActionListener(new ActionListener()
329 public void actionPerformed(ActionEvent e)
331 vamsasStop_actionPerformed(e);
334 closeAll.setText(MessageManager.getString("action.close_all"));
335 closeAll.addActionListener(new ActionListener()
338 public void actionPerformed(ActionEvent e)
340 closeAll_actionPerformed(e);
343 raiseRelated.setText(
344 MessageManager.getString("action.raise_associated_windows"));
345 raiseRelated.addActionListener(new ActionListener()
348 public void actionPerformed(ActionEvent e)
350 raiseRelated_actionPerformed(e);
353 minimizeAssociated.setText(
354 MessageManager.getString("action.minimize_associated_windows"));
355 minimizeAssociated.addActionListener(new ActionListener()
358 public void actionPerformed(ActionEvent e)
360 minimizeAssociated_actionPerformed(e);
364 .setText(MessageManager.getString("label.collect_garbage"));
365 garbageCollect.addActionListener(new ActionListener()
368 public void actionPerformed(ActionEvent e)
370 garbageCollect_actionPerformed(e);
374 .setText(MessageManager.getString("label.show_memory_usage"));
375 showMemusage.addActionListener(new ActionListener()
378 public void actionPerformed(ActionEvent e)
380 showMemusage_actionPerformed(e);
384 .setText(MessageManager.getString("label.show_java_console"));
385 showConsole.addActionListener(new ActionListener()
388 public void actionPerformed(ActionEvent e)
390 showConsole_actionPerformed(e);
393 showNews.setText(MessageManager.getString("label.show_jalview_news"));
394 showNews.addActionListener(new ActionListener()
397 public void actionPerformed(ActionEvent e)
399 showNews_actionPerformed(e);
402 groovyShell = new JMenuItem();
403 groovyShell.setText(MessageManager.getString("label.groovy_console"));
404 groovyShell.addActionListener(new ActionListener()
407 public void actionPerformed(ActionEvent e)
409 groovyShell_actionPerformed();
412 experimentalFeatures = new JCheckBoxMenuItem();
414 .setText(MessageManager.getString("label.show_experimental"));
415 experimentalFeatures.setToolTipText(
416 MessageManager.getString("label.show_experimental_tip"));
417 experimentalFeatures.addActionListener(new ActionListener()
420 public void actionPerformed(ActionEvent e)
422 showExperimental_actionPerformed(experimentalFeatures.isSelected());
426 snapShotWindow.setText(MessageManager.getString("label.take_snapshot"));
427 snapShotWindow.addActionListener(new ActionListener()
430 public void actionPerformed(ActionEvent e)
432 snapShotWindow_actionPerformed(e);
436 desktopMenubar.add(FileMenu);
437 desktopMenubar.add(toolsMenu);
438 VamsasMenu.setVisible(false);
439 desktopMenubar.add(VamsasMenu);
440 desktopMenubar.add(HelpMenu);
441 desktopMenubar.add(windowMenu);
442 FileMenu.add(inputMenu);
443 FileMenu.add(inputSequence);
444 FileMenu.addSeparator();
445 FileMenu.add(saveState);
446 FileMenu.add(loadState);
447 FileMenu.addSeparator();
449 HelpMenu.add(aboutMenuItem);
450 HelpMenu.add(documentationMenuItem);
451 VamsasMenu.add(VamsasStMenu);
452 VamsasStMenu.setVisible(false);
453 VamsasMenu.add(vamsasStart);
454 VamsasMenu.add(vamsasImport);
455 VamsasMenu.add(vamsasSave);
456 VamsasMenu.add(vamsasStop);
457 toolsMenu.add(preferences);
460 toolsMenu.add(showMemusage);
461 toolsMenu.add(showConsole);
465 toolsMenu.add(showNews);
466 toolsMenu.add(garbageCollect);
467 toolsMenu.add(groovyShell);
469 toolsMenu.add(experimentalFeatures);
470 // toolsMenu.add(snapShotWindow);
471 inputMenu.add(inputLocalFileMenuItem);
472 inputMenu.add(inputURLMenuItem);
473 inputMenu.add(inputTextboxMenuItem);
474 windowMenu.add(closeAll);
475 windowMenu.add(raiseRelated);
476 windowMenu.add(minimizeAssociated);
477 windowMenu.addSeparator();
478 // inputMenu.add(vamsasLoad);
481 protected void showExperimental_actionPerformed(boolean selected)
485 protected void groovyShell_actionPerformed()
489 protected void snapShotWindow_actionPerformed(ActionEvent e)
491 // TODO Auto-generated method stub
495 protected void showConsole_actionPerformed(ActionEvent e)
497 // TODO Auto-generated method stub
501 protected void showNews_actionPerformed(ActionEvent e)
503 // TODO Auto-generated method stub
507 protected void showMemusage_actionPerformed(ActionEvent e)
509 // TODO Auto-generated method stub
513 protected void garbageCollect_actionPerformed(ActionEvent e)
515 // TODO Auto-generated method stub
519 protected void vamsasStMenu_actionPerformed()
523 public void vamsasSave_actionPerformed(ActionEvent e)
533 protected void inputLocalFileMenuItem_actionPerformed(
534 jalview.gui.AlignViewport av)
543 * @throws FileFormatException
545 protected void inputURLMenuItem_actionPerformed(
546 jalview.gui.AlignViewport av) throws FileFormatException
556 protected void inputTextboxMenuItem_actionPerformed(
557 AlignmentViewPanel avp)
564 protected void quit()
574 protected void aboutMenuItem_actionPerformed(ActionEvent e)
578 protected void documentationMenuItem_actionPerformed()
588 public void SaveState_actionPerformed(ActionEvent e)
598 protected void preferences_actionPerformed(ActionEvent e)
602 public void saveState_actionPerformed()
606 public void loadState_actionPerformed()
610 public void vamsasStart_actionPerformed(ActionEvent e)
615 public void inputSequence_actionPerformed(ActionEvent e)
620 public void vamsasStop_actionPerformed(ActionEvent e)
625 public void closeAll_actionPerformed(ActionEvent e)
630 public void raiseRelated_actionPerformed(ActionEvent e)
635 public void minimizeAssociated_actionPerformed(ActionEvent e)
640 public void vamsasImport_actionPerformed(ActionEvent e)