2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
3 * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
11 * Jalview is distributed in the hope that it will be useful, but
12 * WITHOUT ANY WARRANTY; without even the implied warranty
13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
14 * PURPOSE. See the GNU General Public License for more details.
16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
18 package jalview.structure;
20 public interface StructureListener
24 * @return list of structure files (unique IDs/filenames) that this listener handles messages for, or null if generic listener (only used by removeListener method)
26 public String[] getPdbFile();
29 * NOT A LISTENER METHOD!
30 * called by structure viewer when the given atom/structure has been moused over. Typically, implementors call StructureSelectionManager.mouseOverStructure
34 public void mouseOverStructure(int atomIndex, String strInfo);
37 * called by StructureSelectionManager to inform viewer to highlight given atomspec
43 public void highlightAtom(int atomIndex, int pdbResNum, String chain,
47 * called by StructureSelectionManager when the colours of a sequence associated with a structure have changed.
48 * @param source (untyped) usually an alignPanel
50 public void updateColours(Object source);
53 * called by Jalview to get the colour for the given atomspec
60 public java.awt.Color getColour(int atomIndex, int pdbResNum,
61 String chain, String pdbId);
64 * called by structureSelectionManager to instruct implementor to release any direct references it may hold to the given object (typically, these are Jalview alignment panels).
67 public void releaseReferences(Object svl);