2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 package jalview.structure;
23 import jalview.datamodel.SequenceI;
25 import java.util.List;
27 public interface StructureListener
30 * Returns a list of structure files (unique IDs/filenames) that this listener
31 * handles messages for, or null if generic listener (only used by
32 * removeListener method)
34 public String[] getPdbFile();
37 * Called by StructureSelectionManager to inform viewer to highlight given
42 public void highlightAtoms(List<AtomSpec> atoms);
45 * Called by StructureSelectionManager when the colours of a sequence
46 * associated with a structure have changed.
49 * (untyped) usually an alignPanel
51 public void updateColours(Object source);
54 * Called by structureSelectionManager to instruct implementor to release any
55 * direct references it may hold to the given object (typically, these are
56 * Jalview alignment panels).
60 public void releaseReferences(Object svl);
63 * Answers true if this listener is interested in the given sequence
68 public boolean isListeningFor(SequenceI seq);