2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
3 * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
11 * Jalview is distributed in the hope that it will be useful, but
12 * WITHOUT ANY WARRANTY; without even the implied warranty
13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
14 * PURPOSE. See the GNU General Public License for more details.
16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
18 package jalview.ws.jws2;
20 import jalview.api.AlignViewportI;
21 import jalview.api.AlignmentViewPanel;
22 import jalview.gui.AlignFrame;
23 import jalview.ws.jws2.dm.AAConSettings;
24 import jalview.ws.jws2.jabaws2.Jws2Instance;
25 import jalview.ws.params.WsParamSetI;
27 import java.util.List;
29 import compbio.metadata.Argument;
31 public abstract class JabawsAlignCalcWorker extends JabawsCalcWorker
34 public JabawsAlignCalcWorker(AlignViewportI alignViewport,
35 AlignmentViewPanel alignPanel)
37 super(alignViewport, alignPanel);
43 public JabawsAlignCalcWorker(Jws2Instance service, AlignFrame alignFrame,
44 WsParamSetI preset, List<Argument> paramset)
46 super(service, alignFrame, preset, paramset);
50 * Recover any existing parameters for this service
52 protected void initViewportParams()
54 ((jalview.gui.AlignViewport) alignViewport).setCalcIdSettingsFor(
56 new AAConSettings(true, service, this.preset,
57 (arguments != null) ? JabaParamStore
58 .getJwsArgsfromJaba(arguments) : null), true);
65 public abstract String getCalcId();
71 public void updateParameters(WsParamSetI newpreset, java.util.List<Argument> newarguments)
73 super.updateParameters(newpreset, newarguments);