2 * This class was automatically generated with
3 * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
8 package org.vamsas.objects.core;
10 //---------------------------------/
11 //- Imported classes and packages -/
12 //---------------------------------/
14 import org.exolab.castor.mapping.AccessMode;
15 import org.exolab.castor.xml.TypeValidator;
16 import org.exolab.castor.xml.XMLFieldDescriptor;
17 import org.exolab.castor.xml.validators.*;
20 * Class AlignmentDescriptor.
22 * @version $Revision$ $Date$
24 public class AlignmentDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {
27 //--------------------------/
28 //- Class/Member Variables -/
29 //--------------------------/
34 private java.lang.String nsPrefix;
39 private java.lang.String nsURI;
44 private java.lang.String xmlName;
49 private org.exolab.castor.xml.XMLFieldDescriptor identity;
56 public AlignmentDescriptor()
59 nsURI = "http://www.vamsas.org";
60 xmlName = "Alignment";
62 //-- set grouping compositor
63 setCompositorAsSequence();
64 org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
65 org.exolab.castor.mapping.FieldHandler handler = null;
66 org.exolab.castor.xml.FieldValidator fieldValidator = null;
67 //-- initialize attribute descriptors
70 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_id", "id", org.exolab.castor.xml.NodeType.Attribute);
72 handler = new org.exolab.castor.xml.XMLFieldHandler() {
73 public java.lang.Object getValue( java.lang.Object object )
74 throws IllegalStateException
76 Alignment target = (Alignment) object;
77 return target.getId();
79 public void setValue( java.lang.Object object, java.lang.Object value)
80 throws IllegalStateException, IllegalArgumentException
83 Alignment target = (Alignment) object;
84 target.setId( (java.lang.String) value);
86 catch (java.lang.Exception ex) {
87 throw new IllegalStateException(ex.toString());
90 public java.lang.Object newInstance( java.lang.Object parent ) {
91 return new java.lang.String();
94 desc.setHandler(handler);
95 desc.setMultivalued(false);
96 addFieldDescriptor(desc);
98 //-- validation code for: _id
99 fieldValidator = new org.exolab.castor.xml.FieldValidator();
102 desc.setValidator(fieldValidator);
103 //-- initialize element descriptors
105 //-- _alignmentAnnotations
106 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(org.vamsas.objects.core.AlignmentAnnotations.class, "_alignmentAnnotations", "AlignmentAnnotations", org.exolab.castor.xml.NodeType.Element);
107 handler = new org.exolab.castor.xml.XMLFieldHandler() {
108 public java.lang.Object getValue( java.lang.Object object )
109 throws IllegalStateException
111 Alignment target = (Alignment) object;
112 return target.getAlignmentAnnotations();
114 public void setValue( java.lang.Object object, java.lang.Object value)
115 throws IllegalStateException, IllegalArgumentException
118 Alignment target = (Alignment) object;
119 target.setAlignmentAnnotations( (org.vamsas.objects.core.AlignmentAnnotations) value);
121 catch (java.lang.Exception ex) {
122 throw new IllegalStateException(ex.toString());
125 public java.lang.Object newInstance( java.lang.Object parent ) {
126 return new org.vamsas.objects.core.AlignmentAnnotations();
129 desc.setHandler(handler);
130 desc.setNameSpaceURI("http://www.vamsas.org");
131 desc.setMultivalued(false);
132 addFieldDescriptor(desc);
134 //-- validation code for: _alignmentAnnotations
135 fieldValidator = new org.exolab.castor.xml.FieldValidator();
138 desc.setValidator(fieldValidator);
140 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(org.vamsas.objects.core.Tree.class, "_treeList", "Tree", org.exolab.castor.xml.NodeType.Element);
141 handler = new org.exolab.castor.xml.XMLFieldHandler() {
142 public java.lang.Object getValue( java.lang.Object object )
143 throws IllegalStateException
145 Alignment target = (Alignment) object;
146 return target.getTree();
148 public void setValue( java.lang.Object object, java.lang.Object value)
149 throws IllegalStateException, IllegalArgumentException
152 Alignment target = (Alignment) object;
153 target.addTree( (org.vamsas.objects.core.Tree) value);
155 catch (java.lang.Exception ex) {
156 throw new IllegalStateException(ex.toString());
159 public java.lang.Object newInstance( java.lang.Object parent ) {
160 return new org.vamsas.objects.core.Tree();
163 desc.setHandler(handler);
164 desc.setNameSpaceURI("http://www.vamsas.org");
165 desc.setMultivalued(true);
166 addFieldDescriptor(desc);
168 //-- validation code for: _treeList
169 fieldValidator = new org.exolab.castor.xml.FieldValidator();
170 fieldValidator.setMinOccurs(0);
173 desc.setValidator(fieldValidator);
174 //-- _alignmentSequenceList
175 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(org.vamsas.objects.core.AlignmentSequence.class, "_alignmentSequenceList", "alignmentSequence", org.exolab.castor.xml.NodeType.Element);
176 handler = new org.exolab.castor.xml.XMLFieldHandler() {
177 public java.lang.Object getValue( java.lang.Object object )
178 throws IllegalStateException
180 Alignment target = (Alignment) object;
181 return target.getAlignmentSequence();
183 public void setValue( java.lang.Object object, java.lang.Object value)
184 throws IllegalStateException, IllegalArgumentException
187 Alignment target = (Alignment) object;
188 target.addAlignmentSequence( (org.vamsas.objects.core.AlignmentSequence) value);
190 catch (java.lang.Exception ex) {
191 throw new IllegalStateException(ex.toString());
194 public java.lang.Object newInstance( java.lang.Object parent ) {
195 return new org.vamsas.objects.core.AlignmentSequence();
198 desc.setHandler(handler);
199 desc.setNameSpaceURI("http://www.vamsas.org");
200 desc.setRequired(true);
201 desc.setMultivalued(true);
202 addFieldDescriptor(desc);
204 //-- validation code for: _alignmentSequenceList
205 fieldValidator = new org.exolab.castor.xml.FieldValidator();
206 fieldValidator.setMinOccurs(2);
209 desc.setValidator(fieldValidator);
211 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(org.vamsas.objects.core.Provenance.class, "_provenance", "Provenance", org.exolab.castor.xml.NodeType.Element);
212 handler = new org.exolab.castor.xml.XMLFieldHandler() {
213 public java.lang.Object getValue( java.lang.Object object )
214 throws IllegalStateException
216 Alignment target = (Alignment) object;
217 return target.getProvenance();
219 public void setValue( java.lang.Object object, java.lang.Object value)
220 throws IllegalStateException, IllegalArgumentException
223 Alignment target = (Alignment) object;
224 target.setProvenance( (org.vamsas.objects.core.Provenance) value);
226 catch (java.lang.Exception ex) {
227 throw new IllegalStateException(ex.toString());
230 public java.lang.Object newInstance( java.lang.Object parent ) {
231 return new org.vamsas.objects.core.Provenance();
234 desc.setHandler(handler);
235 desc.setNameSpaceURI("http://www.vamsas.org");
236 desc.setRequired(true);
237 desc.setMultivalued(false);
238 addFieldDescriptor(desc);
240 //-- validation code for: _provenance
241 fieldValidator = new org.exolab.castor.xml.FieldValidator();
242 fieldValidator.setMinOccurs(1);
245 desc.setValidator(fieldValidator);
246 } //-- org.vamsas.objects.core.AlignmentDescriptor()
254 * Method getAccessMode
260 public org.exolab.castor.mapping.AccessMode getAccessMode()
263 } //-- org.exolab.castor.mapping.AccessMode getAccessMode()
270 * @return ClassDescriptor
272 public org.exolab.castor.mapping.ClassDescriptor getExtends()
275 } //-- org.exolab.castor.mapping.ClassDescriptor getExtends()
282 * @return FieldDescriptor
284 public org.exolab.castor.mapping.FieldDescriptor getIdentity()
287 } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity()
290 * Method getJavaClass
296 public java.lang.Class getJavaClass()
298 return org.vamsas.objects.core.Alignment.class;
299 } //-- java.lang.Class getJavaClass()
302 * Method getNameSpacePrefix
308 public java.lang.String getNameSpacePrefix()
311 } //-- java.lang.String getNameSpacePrefix()
314 * Method getNameSpaceURI
320 public java.lang.String getNameSpaceURI()
323 } //-- java.lang.String getNameSpaceURI()
326 * Method getValidator
330 * @return TypeValidator
332 public org.exolab.castor.xml.TypeValidator getValidator()
335 } //-- org.exolab.castor.xml.TypeValidator getValidator()
344 public java.lang.String getXMLName()
347 } //-- java.lang.String getXMLName()