2 * This class was automatically generated with
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3 * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
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8 package org.vamsas.objects.core;
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10 //---------------------------------/
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11 //- Imported classes and packages -/
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12 //---------------------------------/
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14 import java.io.IOException;
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15 import java.io.Reader;
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16 import java.io.Serializable;
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17 import java.io.Writer;
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18 import org.exolab.castor.xml.MarshalException;
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19 import org.exolab.castor.xml.Marshaller;
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20 import org.exolab.castor.xml.Unmarshaller;
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21 import org.exolab.castor.xml.ValidationException;
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22 import org.xml.sax.ContentHandler;
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25 * Class AlignmentSequenceAnnotation.
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27 * @version $Revision$ $Date$
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29 public class AlignmentSequenceAnnotation extends org.vamsas.objects.core.RangeAnnotation
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30 implements java.io.Serializable
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34 //--------------------------/
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35 //- Class/Member Variables -/
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36 //--------------------------/
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62 private boolean _graph;
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65 * keeps track of state for field: _graph
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67 private boolean _has_graph;
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72 private org.vamsas.objects.core.Provenance _provenance;
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79 public AlignmentSequenceAnnotation()
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82 } //-- org.vamsas.objects.core.AlignmentSequenceAnnotation()
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90 * Method deleteGraph
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93 public void deleteGraph()
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95 this._has_graph= false;
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96 } //-- void deleteGraph()
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99 * Note: hashCode() has not been overriden
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104 public boolean equals(java.lang.Object obj)
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109 if (super.equals(obj)==false)
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112 if (obj instanceof AlignmentSequenceAnnotation) {
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114 AlignmentSequenceAnnotation temp = (AlignmentSequenceAnnotation)obj;
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115 if (this._graph != temp._graph)
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117 if (this._has_graph != temp._has_graph)
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119 if (this._provenance != null) {
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120 if (temp._provenance == null) return false;
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121 else if (!(this._provenance.equals(temp._provenance)))
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124 else if (temp._provenance != null)
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129 } //-- boolean equals(java.lang.Object)
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132 * Returns the value of field 'graph'. The field 'graph' has
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133 * the following description: TODO:
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148 * annotationElement
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157 * @return the value of field 'graph'.
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159 public boolean getGraph()
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161 return this._graph;
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162 } //-- boolean getGraph()
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165 * Returns the value of field 'provenance'.
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167 * @return Provenance
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168 * @return the value of field 'provenance'.
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170 public org.vamsas.objects.core.Provenance getProvenance()
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172 return this._provenance;
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173 } //-- org.vamsas.objects.core.Provenance getProvenance()
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182 public boolean hasGraph()
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184 return this._has_graph;
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185 } //-- boolean hasGraph()
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194 public boolean isValid()
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199 catch (org.exolab.castor.xml.ValidationException vex) {
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203 } //-- boolean isValid()
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212 public void marshal(java.io.Writer out)
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213 throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
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216 Marshaller.marshal(this, out);
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217 } //-- void marshal(java.io.Writer)
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226 public void marshal(org.xml.sax.ContentHandler handler)
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227 throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
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230 Marshaller.marshal(this, handler);
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231 } //-- void marshal(org.xml.sax.ContentHandler)
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234 * Sets the value of field 'graph'. The field 'graph' has the
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235 * following description: TODO:
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250 * annotationElement
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258 * @param graph the value of field 'graph'.
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260 public void setGraph(boolean graph)
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262 this._graph = graph;
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263 this._has_graph = true;
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264 } //-- void setGraph(boolean)
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267 * Sets the value of field 'provenance'.
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269 * @param provenance the value of field 'provenance'.
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271 public void setProvenance(org.vamsas.objects.core.Provenance provenance)
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273 this._provenance = provenance;
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274 } //-- void setProvenance(org.vamsas.objects.core.Provenance)
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282 * @return RangeType
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284 public static org.vamsas.objects.core.RangeType unmarshal(java.io.Reader reader)
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285 throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
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287 return (org.vamsas.objects.core.AlignmentSequenceAnnotation) Unmarshaller.unmarshal(org.vamsas.objects.core.AlignmentSequenceAnnotation.class, reader);
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288 } //-- org.vamsas.objects.core.RangeType unmarshal(java.io.Reader)
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294 public void validate()
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295 throws org.exolab.castor.xml.ValidationException
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297 org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
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298 validator.validate(this);
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299 } //-- void validate()
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