2 * This class was automatically generated with
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3 * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
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8 package uk.ac.vamsas.objects.core.descriptors;
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10 //---------------------------------/
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11 //- Imported classes and packages -/
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12 //---------------------------------/
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14 import uk.ac.vamsas.objects.core.Alignment;
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17 * Class AlignmentDescriptor.
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19 * @version $Revision$ $Date$
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21 public class AlignmentDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {
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24 //--------------------------/
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25 //- Class/Member Variables -/
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26 //--------------------------/
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29 * Field _elementDefinition.
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31 private boolean _elementDefinition;
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36 private java.lang.String _nsPrefix;
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41 private java.lang.String _nsURI;
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46 private java.lang.String _xmlName;
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53 public AlignmentDescriptor() {
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55 _nsURI = "http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes";
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56 _xmlName = "Alignment";
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57 _elementDefinition = true;
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59 //-- set grouping compositor
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60 setCompositorAsSequence();
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61 org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
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62 org.exolab.castor.mapping.FieldHandler handler = null;
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63 org.exolab.castor.xml.FieldValidator fieldValidator = null;
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64 //-- initialize attribute descriptors
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67 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_gapChar", "gapChar", org.exolab.castor.xml.NodeType.Attribute);
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68 desc.setImmutable(true);
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69 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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70 public java.lang.Object getValue( java.lang.Object object )
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71 throws IllegalStateException
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73 Alignment target = (Alignment) object;
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74 return target.getGapChar();
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76 public void setValue( java.lang.Object object, java.lang.Object value)
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77 throws IllegalStateException, IllegalArgumentException
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80 Alignment target = (Alignment) object;
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81 target.setGapChar( (java.lang.String) value);
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82 } catch (java.lang.Exception ex) {
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83 throw new IllegalStateException(ex.toString());
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86 public java.lang.Object newInstance(java.lang.Object parent) {
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90 desc.setHandler(handler);
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91 desc.setRequired(true);
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92 desc.setMultivalued(false);
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93 addFieldDescriptor(desc);
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95 //-- validation code for: _gapChar
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96 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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97 fieldValidator.setMinOccurs(1);
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99 org.exolab.castor.xml.validators.StringValidator typeValidator;
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100 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
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101 fieldValidator.setValidator(typeValidator);
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102 typeValidator.setWhiteSpace("preserve");
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104 desc.setValidator(fieldValidator);
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106 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_aligned", "aligned", org.exolab.castor.xml.NodeType.Attribute);
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107 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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108 public java.lang.Object getValue( java.lang.Object object )
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109 throws IllegalStateException
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111 Alignment target = (Alignment) object;
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112 if (!target.hasAligned()) { return null; }
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113 return (target.getAligned() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
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115 public void setValue( java.lang.Object object, java.lang.Object value)
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116 throws IllegalStateException, IllegalArgumentException
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119 Alignment target = (Alignment) object;
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120 // if null, use delete method for optional primitives
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121 if (value == null) {
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122 target.deleteAligned();
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125 target.setAligned( ((java.lang.Boolean) value).booleanValue());
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126 } catch (java.lang.Exception ex) {
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127 throw new IllegalStateException(ex.toString());
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130 public java.lang.Object newInstance(java.lang.Object parent) {
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134 desc.setHandler(handler);
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135 desc.setMultivalued(false);
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136 addFieldDescriptor(desc);
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138 //-- validation code for: _aligned
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139 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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141 org.exolab.castor.xml.validators.BooleanValidator typeValidator;
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142 typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
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143 fieldValidator.setValidator(typeValidator);
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145 desc.setValidator(fieldValidator);
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147 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_id", "id", org.exolab.castor.xml.NodeType.Attribute);
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148 super.setIdentity(desc);
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149 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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150 public java.lang.Object getValue( java.lang.Object object )
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151 throws IllegalStateException
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153 Alignment target = (Alignment) object;
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154 return target.getId();
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156 public void setValue( java.lang.Object object, java.lang.Object value)
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157 throws IllegalStateException, IllegalArgumentException
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160 Alignment target = (Alignment) object;
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161 target.setId( (java.lang.String) value);
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162 } catch (java.lang.Exception ex) {
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163 throw new IllegalStateException(ex.toString());
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166 public java.lang.Object newInstance(java.lang.Object parent) {
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167 return new java.lang.String();
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170 desc.setHandler(handler);
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171 desc.setMultivalued(false);
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172 addFieldDescriptor(desc);
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174 //-- validation code for: _id
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175 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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177 org.exolab.castor.xml.validators.IdValidator typeValidator;
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178 typeValidator = new org.exolab.castor.xml.validators.IdValidator();
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179 fieldValidator.setValidator(typeValidator);
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181 desc.setValidator(fieldValidator);
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183 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_modifiable", "modifiable", org.exolab.castor.xml.NodeType.Attribute);
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184 desc.setImmutable(true);
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185 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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186 public java.lang.Object getValue( java.lang.Object object )
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187 throws IllegalStateException
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189 Alignment target = (Alignment) object;
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190 return target.getModifiable();
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192 public void setValue( java.lang.Object object, java.lang.Object value)
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193 throws IllegalStateException, IllegalArgumentException
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196 Alignment target = (Alignment) object;
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197 target.setModifiable( (java.lang.String) value);
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198 } catch (java.lang.Exception ex) {
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199 throw new IllegalStateException(ex.toString());
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202 public java.lang.Object newInstance(java.lang.Object parent) {
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206 desc.setHandler(handler);
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207 desc.setMultivalued(false);
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208 addFieldDescriptor(desc);
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210 //-- validation code for: _modifiable
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211 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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213 org.exolab.castor.xml.validators.StringValidator typeValidator;
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214 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
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215 fieldValidator.setValidator(typeValidator);
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216 typeValidator.setWhiteSpace("preserve");
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218 desc.setValidator(fieldValidator);
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219 //-- initialize element descriptors
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221 //-- _alignmentAnnotationList
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222 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(uk.ac.vamsas.objects.core.AlignmentAnnotation.class, "_alignmentAnnotationList", "AlignmentAnnotation", org.exolab.castor.xml.NodeType.Element);
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223 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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224 public java.lang.Object getValue( java.lang.Object object )
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225 throws IllegalStateException
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227 Alignment target = (Alignment) object;
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228 return target.getAlignmentAnnotation();
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230 public void setValue( java.lang.Object object, java.lang.Object value)
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231 throws IllegalStateException, IllegalArgumentException
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234 Alignment target = (Alignment) object;
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235 target.addAlignmentAnnotation( (uk.ac.vamsas.objects.core.AlignmentAnnotation) value);
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236 } catch (java.lang.Exception ex) {
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237 throw new IllegalStateException(ex.toString());
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240 public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
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242 Alignment target = (Alignment) object;
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243 target.removeAllAlignmentAnnotation();
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244 } catch (java.lang.Exception ex) {
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245 throw new IllegalStateException(ex.toString());
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248 public java.lang.Object newInstance(java.lang.Object parent) {
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249 return new uk.ac.vamsas.objects.core.AlignmentAnnotation();
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252 desc.setHandler(handler);
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253 desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes");
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254 desc.setMultivalued(true);
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255 addFieldDescriptor(desc);
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257 //-- validation code for: _alignmentAnnotationList
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258 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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259 fieldValidator.setMinOccurs(0);
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262 desc.setValidator(fieldValidator);
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264 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(uk.ac.vamsas.objects.core.Tree.class, "_treeList", "Tree", org.exolab.castor.xml.NodeType.Element);
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265 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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266 public java.lang.Object getValue( java.lang.Object object )
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267 throws IllegalStateException
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269 Alignment target = (Alignment) object;
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270 return target.getTree();
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272 public void setValue( java.lang.Object object, java.lang.Object value)
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273 throws IllegalStateException, IllegalArgumentException
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276 Alignment target = (Alignment) object;
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277 target.addTree( (uk.ac.vamsas.objects.core.Tree) value);
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278 } catch (java.lang.Exception ex) {
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279 throw new IllegalStateException(ex.toString());
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282 public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
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284 Alignment target = (Alignment) object;
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285 target.removeAllTree();
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286 } catch (java.lang.Exception ex) {
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287 throw new IllegalStateException(ex.toString());
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290 public java.lang.Object newInstance(java.lang.Object parent) {
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291 return new uk.ac.vamsas.objects.core.Tree();
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294 desc.setHandler(handler);
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295 desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes");
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296 desc.setMultivalued(true);
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297 addFieldDescriptor(desc);
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299 //-- validation code for: _treeList
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300 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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301 fieldValidator.setMinOccurs(0);
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304 desc.setValidator(fieldValidator);
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305 //-- _alignmentSequenceList
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306 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(uk.ac.vamsas.objects.core.AlignmentSequence.class, "_alignmentSequenceList", "alignmentSequence", org.exolab.castor.xml.NodeType.Element);
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307 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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308 public java.lang.Object getValue( java.lang.Object object )
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309 throws IllegalStateException
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311 Alignment target = (Alignment) object;
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312 return target.getAlignmentSequence();
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314 public void setValue( java.lang.Object object, java.lang.Object value)
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315 throws IllegalStateException, IllegalArgumentException
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318 Alignment target = (Alignment) object;
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319 target.addAlignmentSequence( (uk.ac.vamsas.objects.core.AlignmentSequence) value);
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320 } catch (java.lang.Exception ex) {
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321 throw new IllegalStateException(ex.toString());
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324 public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
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326 Alignment target = (Alignment) object;
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327 target.removeAllAlignmentSequence();
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328 } catch (java.lang.Exception ex) {
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329 throw new IllegalStateException(ex.toString());
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332 public java.lang.Object newInstance(java.lang.Object parent) {
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333 return new uk.ac.vamsas.objects.core.AlignmentSequence();
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336 desc.setHandler(handler);
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337 desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes");
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338 desc.setRequired(true);
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339 desc.setMultivalued(true);
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340 addFieldDescriptor(desc);
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342 //-- validation code for: _alignmentSequenceList
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343 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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344 fieldValidator.setMinOccurs(1);
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347 desc.setValidator(fieldValidator);
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349 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(uk.ac.vamsas.objects.core.Property.class, "_propertyList", "property", org.exolab.castor.xml.NodeType.Element);
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350 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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351 public java.lang.Object getValue( java.lang.Object object )
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352 throws IllegalStateException
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354 Alignment target = (Alignment) object;
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355 return target.getProperty();
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357 public void setValue( java.lang.Object object, java.lang.Object value)
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358 throws IllegalStateException, IllegalArgumentException
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361 Alignment target = (Alignment) object;
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362 target.addProperty( (uk.ac.vamsas.objects.core.Property) value);
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363 } catch (java.lang.Exception ex) {
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364 throw new IllegalStateException(ex.toString());
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367 public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
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369 Alignment target = (Alignment) object;
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370 target.removeAllProperty();
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371 } catch (java.lang.Exception ex) {
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372 throw new IllegalStateException(ex.toString());
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375 public java.lang.Object newInstance(java.lang.Object parent) {
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376 return new uk.ac.vamsas.objects.core.Property();
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379 desc.setHandler(handler);
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380 desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes");
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381 desc.setMultivalued(true);
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382 addFieldDescriptor(desc);
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384 //-- validation code for: _propertyList
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385 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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386 fieldValidator.setMinOccurs(0);
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389 desc.setValidator(fieldValidator);
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391 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(uk.ac.vamsas.objects.core.Provenance.class, "_provenance", "Provenance", org.exolab.castor.xml.NodeType.Element);
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392 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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393 public java.lang.Object getValue( java.lang.Object object )
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394 throws IllegalStateException
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396 Alignment target = (Alignment) object;
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397 return target.getProvenance();
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399 public void setValue( java.lang.Object object, java.lang.Object value)
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400 throws IllegalStateException, IllegalArgumentException
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403 Alignment target = (Alignment) object;
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404 target.setProvenance( (uk.ac.vamsas.objects.core.Provenance) value);
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405 } catch (java.lang.Exception ex) {
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406 throw new IllegalStateException(ex.toString());
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409 public java.lang.Object newInstance(java.lang.Object parent) {
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410 return new uk.ac.vamsas.objects.core.Provenance();
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413 desc.setHandler(handler);
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414 desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes");
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415 desc.setRequired(true);
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416 desc.setMultivalued(false);
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417 addFieldDescriptor(desc);
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419 //-- validation code for: _provenance
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420 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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421 fieldValidator.setMinOccurs(1);
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424 desc.setValidator(fieldValidator);
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433 * Method getAccessMode.
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435 * @return the access mode specified for this class.
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437 public org.exolab.castor.mapping.AccessMode getAccessMode(
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443 * Method getIdentity.
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445 * @return the identity field, null if this class has no
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448 public org.exolab.castor.mapping.FieldDescriptor getIdentity(
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450 return super.getIdentity();
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454 * Method getJavaClass.
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456 * @return the Java class represented by this descriptor.
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458 public java.lang.Class getJavaClass(
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460 return uk.ac.vamsas.objects.core.Alignment.class;
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464 * Method getNameSpacePrefix.
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466 * @return the namespace prefix to use when marshaling as XML.
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468 public java.lang.String getNameSpacePrefix(
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474 * Method getNameSpaceURI.
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476 * @return the namespace URI used when marshaling and
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477 * unmarshaling as XML.
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479 public java.lang.String getNameSpaceURI(
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485 * Method getValidator.
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487 * @return a specific validator for the class described by this
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490 public org.exolab.castor.xml.TypeValidator getValidator(
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496 * Method getXMLName.
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498 * @return the XML Name for the Class being described.
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500 public java.lang.String getXMLName(
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506 * Method isElementDefinition.
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508 * @return true if XML schema definition of this Class is that
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510 * element or element with anonymous type definition.
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512 public boolean isElementDefinition(
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514 return _elementDefinition;
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