2 * This file is part of the Vamsas Client version 0.1.
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3 * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite,
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4 * Andrew Waterhouse and Dominik Lindner.
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6 * Earlier versions have also been incorporated into Jalview version 2.4
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7 * since 2008, and TOPALi version 2 since 2007.
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9 * The Vamsas Client is free software: you can redistribute it and/or modify
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10 * it under the terms of the GNU Lesser General Public License as published by
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11 * the Free Software Foundation, either version 3 of the License, or
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12 * (at your option) any later version.
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14 * The Vamsas Client is distributed in the hope that it will be useful,
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15 * but WITHOUT ANY WARRANTY; without even the implied warranty of
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16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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17 * GNU Lesser General Public License for more details.
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19 * You should have received a copy of the GNU Lesser General Public License
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20 * along with the Vamsas Client. If not, see <http://www.gnu.org/licenses/>.
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22 package uk.ac.vamsas.objects.core.descriptors;
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24 //---------------------------------/
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25 //- Imported classes and packages -/
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26 //---------------------------------/
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28 import uk.ac.vamsas.objects.core.Range;
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31 * Class RangeDescriptor.
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33 * @version $Revision$ $Date$
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35 public class RangeDescriptor extends
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36 org.exolab.castor.xml.util.XMLClassDescriptorImpl {
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38 // --------------------------/
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39 // - Class/Member Variables -/
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40 // --------------------------/
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43 * Field _elementDefinition.
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45 private boolean _elementDefinition;
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50 private java.lang.String _nsPrefix;
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55 private java.lang.String _nsURI;
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60 private java.lang.String _xmlName;
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65 private org.exolab.castor.xml.XMLFieldDescriptor _identity;
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67 // ----------------/
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68 // - Constructors -/
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69 // ----------------/
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71 public RangeDescriptor() {
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73 _nsURI = "http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes";
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75 _elementDefinition = true;
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76 org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
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77 org.exolab.castor.mapping.FieldHandler handler = null;
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78 org.exolab.castor.xml.FieldValidator fieldValidator = null;
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79 // -- initialize attribute descriptors
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82 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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83 java.lang.Integer.TYPE, "_seqAStart", "seqAStart",
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84 org.exolab.castor.xml.NodeType.Attribute);
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85 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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86 public java.lang.Object getValue(java.lang.Object object)
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87 throws IllegalStateException {
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88 Range target = (Range) object;
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89 if (!target.hasSeqAStart()) {
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92 return new java.lang.Integer(target.getSeqAStart());
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95 public void setValue(java.lang.Object object, java.lang.Object value)
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96 throws IllegalStateException, IllegalArgumentException {
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98 Range target = (Range) object;
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99 // if null, use delete method for optional primitives
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100 if (value == null) {
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101 target.deleteSeqAStart();
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104 target.setSeqAStart(((java.lang.Integer) value).intValue());
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105 } catch (java.lang.Exception ex) {
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106 throw new IllegalStateException(ex.toString());
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110 public java.lang.Object newInstance(java.lang.Object parent) {
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114 desc.setHandler(handler);
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115 desc.setMultivalued(false);
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116 addFieldDescriptor(desc);
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118 // -- validation code for: _seqAStart
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119 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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120 { // -- local scope
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121 org.exolab.castor.xml.validators.IntValidator typeValidator;
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122 typeValidator = new org.exolab.castor.xml.validators.IntValidator();
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123 fieldValidator.setValidator(typeValidator);
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124 typeValidator.setMinInclusive(-2147483648);
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125 typeValidator.setMaxInclusive(2147483647);
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127 desc.setValidator(fieldValidator);
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129 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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130 java.lang.Integer.TYPE, "_seqAEnd", "seqAEnd",
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131 org.exolab.castor.xml.NodeType.Attribute);
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132 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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133 public java.lang.Object getValue(java.lang.Object object)
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134 throws IllegalStateException {
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135 Range target = (Range) object;
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136 if (!target.hasSeqAEnd()) {
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139 return new java.lang.Integer(target.getSeqAEnd());
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142 public void setValue(java.lang.Object object, java.lang.Object value)
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143 throws IllegalStateException, IllegalArgumentException {
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145 Range target = (Range) object;
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146 // if null, use delete method for optional primitives
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147 if (value == null) {
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148 target.deleteSeqAEnd();
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151 target.setSeqAEnd(((java.lang.Integer) value).intValue());
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152 } catch (java.lang.Exception ex) {
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153 throw new IllegalStateException(ex.toString());
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157 public java.lang.Object newInstance(java.lang.Object parent) {
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161 desc.setHandler(handler);
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162 desc.setMultivalued(false);
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163 addFieldDescriptor(desc);
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165 // -- validation code for: _seqAEnd
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166 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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167 { // -- local scope
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168 org.exolab.castor.xml.validators.IntValidator typeValidator;
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169 typeValidator = new org.exolab.castor.xml.validators.IntValidator();
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170 fieldValidator.setValidator(typeValidator);
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171 typeValidator.setMinInclusive(-2147483648);
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172 typeValidator.setMaxInclusive(2147483647);
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174 desc.setValidator(fieldValidator);
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176 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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177 java.lang.Integer.TYPE, "_seqBStart", "seqBStart",
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178 org.exolab.castor.xml.NodeType.Attribute);
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179 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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180 public java.lang.Object getValue(java.lang.Object object)
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181 throws IllegalStateException {
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182 Range target = (Range) object;
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183 if (!target.hasSeqBStart()) {
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186 return new java.lang.Integer(target.getSeqBStart());
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189 public void setValue(java.lang.Object object, java.lang.Object value)
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190 throws IllegalStateException, IllegalArgumentException {
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192 Range target = (Range) object;
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193 // if null, use delete method for optional primitives
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194 if (value == null) {
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195 target.deleteSeqBStart();
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198 target.setSeqBStart(((java.lang.Integer) value).intValue());
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199 } catch (java.lang.Exception ex) {
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200 throw new IllegalStateException(ex.toString());
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204 public java.lang.Object newInstance(java.lang.Object parent) {
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208 desc.setHandler(handler);
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209 desc.setMultivalued(false);
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210 addFieldDescriptor(desc);
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212 // -- validation code for: _seqBStart
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213 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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214 { // -- local scope
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215 org.exolab.castor.xml.validators.IntValidator typeValidator;
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216 typeValidator = new org.exolab.castor.xml.validators.IntValidator();
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217 fieldValidator.setValidator(typeValidator);
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218 typeValidator.setMinInclusive(-2147483648);
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219 typeValidator.setMaxInclusive(2147483647);
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221 desc.setValidator(fieldValidator);
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223 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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224 java.lang.Integer.TYPE, "_seqBEnd", "seqBEnd",
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225 org.exolab.castor.xml.NodeType.Attribute);
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226 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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227 public java.lang.Object getValue(java.lang.Object object)
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228 throws IllegalStateException {
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229 Range target = (Range) object;
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230 if (!target.hasSeqBEnd()) {
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233 return new java.lang.Integer(target.getSeqBEnd());
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236 public void setValue(java.lang.Object object, java.lang.Object value)
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237 throws IllegalStateException, IllegalArgumentException {
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239 Range target = (Range) object;
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240 // if null, use delete method for optional primitives
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241 if (value == null) {
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242 target.deleteSeqBEnd();
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245 target.setSeqBEnd(((java.lang.Integer) value).intValue());
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246 } catch (java.lang.Exception ex) {
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247 throw new IllegalStateException(ex.toString());
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251 public java.lang.Object newInstance(java.lang.Object parent) {
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255 desc.setHandler(handler);
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256 desc.setMultivalued(false);
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257 addFieldDescriptor(desc);
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259 // -- validation code for: _seqBEnd
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260 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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261 { // -- local scope
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262 org.exolab.castor.xml.validators.IntValidator typeValidator;
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263 typeValidator = new org.exolab.castor.xml.validators.IntValidator();
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264 fieldValidator.setValidator(typeValidator);
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265 typeValidator.setMinInclusive(-2147483648);
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266 typeValidator.setMaxInclusive(2147483647);
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268 desc.setValidator(fieldValidator);
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269 // -- initialize element descriptors
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278 * Method getAccessMode.
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280 * @return the access mode specified for this class.
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282 public org.exolab.castor.mapping.AccessMode getAccessMode() {
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287 * Method getIdentity.
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289 * @return the identity field, null if this class has no identity.
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291 public org.exolab.castor.mapping.FieldDescriptor getIdentity() {
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296 * Method getJavaClass.
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298 * @return the Java class represented by this descriptor.
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300 public java.lang.Class getJavaClass() {
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301 return uk.ac.vamsas.objects.core.Range.class;
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305 * Method getNameSpacePrefix.
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307 * @return the namespace prefix to use when marshaling as XML.
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309 public java.lang.String getNameSpacePrefix() {
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314 * Method getNameSpaceURI.
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316 * @return the namespace URI used when marshaling and unmarshaling as XML.
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318 public java.lang.String getNameSpaceURI() {
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323 * Method getValidator.
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325 * @return a specific validator for the class described by this
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328 public org.exolab.castor.xml.TypeValidator getValidator() {
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333 * Method getXMLName.
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335 * @return the XML Name for the Class being described.
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337 public java.lang.String getXMLName() {
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342 * Method isElementDefinition.
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344 * @return true if XML schema definition of this Class is that of a global
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345 * element or element with anonymous type definition.
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347 public boolean isElementDefinition() {
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348 return _elementDefinition;
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