1 package uk.ac.vamsas.objects.utils;
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3 import java.io.IOException;
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5 import uk.ac.vamsas.objects.core.Tree;
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6 import uk.ac.vamsas.objects.utils.trees.NewickFile;
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12 * helper functions based on NewickFile tree parser
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14 * 1. create a newickfile object from a newick string.
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15 * 2. let user map a vamsas object to each node by setting that node's ((SequenceNode)node).setElement(VorbaId)
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16 * 3. generate Tree object with newickString as a newick string, and added treenodes to record mapping to vorba ids
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