2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 package jalview.datamodel;
23 import static org.testng.AssertJUnit.assertEquals;
24 import static org.testng.AssertJUnit.assertFalse;
25 import static org.testng.AssertJUnit.assertTrue;
27 import org.testng.annotations.Test;
29 public class MatchTest
32 @Test(groups = { "Functional" })
33 public void testToString()
35 SequenceI seq = new Sequence("Seq1", "abcdefghijklm");
36 SearchResultMatchI m = new SearchResults().new Match(seq, 3, 5);
37 assertEquals("Seq1/3-5", m.toString());
40 @Test(groups = { "Functional" })
41 public void testEquals()
43 SequenceI seq1 = new Sequence("", "abcdefghijklm");
44 SequenceI seq2 = new Sequence("", "abcdefghijklm");
45 SearchResultsI sr1 = new SearchResults();
46 SearchResultsI sr2 = new SearchResults();
48 assertFalse(sr1.equals(null));
49 assertFalse(sr1.equals(seq1));
50 assertTrue(sr1.equals(sr1));
51 assertTrue(sr1.equals(sr2));
52 assertTrue(sr2.equals(sr1));
54 sr1.addResult(seq1, 1, 1);
55 assertFalse(sr1.equals(sr2));
56 assertFalse(sr2.equals(sr1));
58 sr2.addResult(seq1, 1, 1);
59 assertTrue(sr1.equals(sr2));
60 assertTrue(sr2.equals(sr1));
63 * same match but on different sequences - not equal
65 SearchResultsI sr3 = new SearchResults();
66 sr3.addResult(seq2, 1, 1);
67 assertFalse(sr1.equals(sr3));
68 assertFalse(sr3.equals(sr1));
71 * same sequence but different end position - not equal
73 sr1.addResult(seq1, 3, 4);
74 sr2.addResult(seq1, 3, 5);
75 assertFalse(sr1.equals(sr2));
78 * same sequence but different start position - not equal
80 sr1 = new SearchResults();
81 sr2 = new SearchResults();
82 sr1.addResult(seq1, 3, 4);
83 sr2.addResult(seq1, 2, 4);
84 assertFalse(sr1.equals(sr2));