1 <html><head><title>testng.xml for Ant suite</title></head><body><tt><!DOCTYPE suite SYSTEM "http://testng.org/testng-1.0.dtd"><br/><suite thread-count="5" skipfailedinvocationCounts="false" verbose="3" name="Ant suite" junit="false" annotations="JDK" data-provider-thread-count="10"><br/> <test name="Ant test" junit="false"><br/> <groups><br/> <run><br/> <exclude name="performance"/><br/> </run><br/> </groups><br/> <classes><br/> <class name="compbio.data._structure.JnetAnnotation$AType"/><br/> <class name="compbio.data._structure.JnetAnnotation"/><br/> <class name="compbio.data._structure.JpredAnnotation"/><br/> <class name="compbio.data._structure.JpredResult"/><br/> <class name="compbio.data.msa.MsaWS"/><br/> <class name="compbio.data.msa.jaxws.Align"/><br/> <class name="compbio.data.msa.jaxws.AlignResponse"/><br/> <class name="compbio.data.msa.jaxws.CancelJob"/><br/> <class name="compbio.data.msa.jaxws.CancelJobResponse"/><br/> <class name="compbio.data.msa.jaxws.CustomAlign"/><br/> <class name="compbio.data.msa.jaxws.CustomAlignResponse"/><br/> <class name="compbio.data.msa.jaxws.GetJobStatus"/><br/> <class name="compbio.data.msa.jaxws.GetJobStatusResponse"/><br/> <class name="compbio.data.msa.jaxws.GetLimit"/><br/> <class name="compbio.data.msa.jaxws.GetLimitResponse"/><br/> <class name="compbio.data.msa.jaxws.GetLimits"/><br/> <class name="compbio.data.msa.jaxws.GetLimitsResponse"/><br/> <class name="compbio.data.msa.jaxws.GetPresets"/><br/> <class name="compbio.data.msa.jaxws.GetPresetsResponse"/><br/> <class name="compbio.data.msa.jaxws.GetProgress"/><br/> <class name="compbio.data.msa.jaxws.GetProgressResponse"/><br/> <class name="compbio.data.msa.jaxws.GetResult"/><br/> <class name="compbio.data.msa.jaxws.GetResultResponse"/><br/> <class name="compbio.data.msa.jaxws.GetRunnerOptions"/><br/> <class name="compbio.data.msa.jaxws.GetRunnerOptionsResponse"/><br/> <class name="compbio.data.msa.jaxws.JobExecutionExceptionBean"/><br/> <class name="compbio.data.msa.jaxws.JobSubmissionExceptionBean"/><br/> <class name="compbio.data.msa.jaxws.LimitExceededExceptionBean"/><br/> <class name="compbio.data.msa.jaxws.PresetAlign"/><br/> <class name="compbio.data.msa.jaxws.PresetAlignResponse"/><br/> <class name="compbio.data.msa.jaxws.PullExecStatistics"/><br/> <class name="compbio.data.msa.jaxws.PullExecStatisticsResponse"/><br/> <class name="compbio.data.msa.jaxws.PullFile"/><br/> <class name="compbio.data.msa.jaxws.PullFileResponse"/><br/> <class name="compbio.data.msa.jaxws.ResultNotAvailableExceptionBean"/><br/> <class name="compbio.data.msa.jaxws.UnsupportedRuntimeExceptionBean"/><br/> <class name="compbio.data.msa.jaxws.WrongParameterExceptionBean"/><br/> <class name="compbio.data.sequence.Alignment"/><br/> <class name="compbio.data.sequence.AlignmentMetadata"/><br/> <class name="compbio.data.sequence.ClustalAlignmentUtil"/><br/> <class name="compbio.data.sequence.ClustalAlignmentUtilTester"/><br/> <class name="compbio.data.sequence.FastaGeneratorManager"/><br/> <class name="compbio.data.sequence.FastaSequence"/><br/> <class name="compbio.data.sequence.FastaSequenceGenerator$1"/><br/> <class name="compbio.data.sequence.FastaSequenceGenerator$DNAAlphabet"/><br/> <class name="compbio.data.sequence.FastaSequenceGenerator$Letters"/><br/> <class name="compbio.data.sequence.FastaSequenceGenerator$ProteinAlphabet"/><br/> <class name="compbio.data.sequence.FastaSequenceGenerator$SeqType"/><br/> <class name="compbio.data.sequence.FastaSequenceGenerator"/><br/> <class name="compbio.data.sequence.FastaSequenceGeneratorTester"/><br/> <class name="compbio.data.sequence.FastaSequenceTester"/><br/> <class name="compbio.data.sequence.Program"/><br/> <class name="compbio.data.sequence.SequenceUtil"/><br/> <class name="compbio.data.sequence.SequenceUtilTester"/><br/> <class name="compbio.data.sequence.UnknownFileFormatException"/><br/> <class name="compbio.engine.AsyncExecutor"/><br/> <class name="compbio.engine.Cleaner"/><br/> <class name="compbio.engine.ClusterJobId"/><br/> <class name="compbio.engine.Configurator"/><br/> <class name="compbio.engine.EngineConfiguratorTester"/><br/> <class name="compbio.engine.FilePuller"/><br/> <class name="compbio.engine.FilePullerTester"/><br/> <class name="compbio.engine.Job"/><br/> <class name="compbio.engine.LoadBalancer"/><br/> <class name="compbio.engine.ProgressGetter"/><br/> <class name="compbio.engine.PulledFileCache"/><br/> <class name="compbio.engine.PulledFileCacheTester"/><br/> <class name="compbio.engine.SubmissionManager"/><br/> <class name="compbio.engine.SyncExecutor"/><br/> <class name="compbio.engine.client.ClusterNativeSpecExecutable"/><br/> <class name="compbio.engine.client.CommandBuilder$Parameter"/><br/> <class name="compbio.engine.client.CommandBuilder"/><br/> <class name="compbio.engine.client.CommandBuilderTester"/><br/> <class name="compbio.engine.client.ConfExecutable"/><br/> <class name="compbio.engine.client.ConfiguredExecutable"/><br/> <class name="compbio.engine.client.EnvVariableProcessor"/><br/> <class name="compbio.engine.client.Executable$ExecProvider"/><br/> <class name="compbio.engine.client.Executable"/><br/> <class name="compbio.engine.client.PathValidator"/><br/> <class name="compbio.engine.client.PathValidatorTester"/><br/> <class name="compbio.engine.client.PipedExecutable"/><br/> <class name="compbio.engine.client.RunConfiguration"/><br/> <class name="compbio.engine.client.SkeletalExecutable"/><br/> <class name="compbio.engine.client.Util"/><br/> <class name="compbio.engine.cluster.drmaa.AsyncJobRunner"/><br/> <class name="compbio.engine.cluster.drmaa.ClusterSession$1"/><br/> <class name="compbio.engine.cluster.drmaa.ClusterSession"/><br/> <class name="compbio.engine.cluster.drmaa.ClusterSessionTester"/><br/> <class name="compbio.engine.cluster.drmaa.ClusterUtil"/><br/> <class name="compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester"/><br/> <class name="compbio.engine.cluster.drmaa.DrmaaClusterEngineTester"/><br/> <class name="compbio.engine.cluster.drmaa.JobRunner"/><br/> <class name="compbio.engine.cluster.drmaa.StatisticManager"/><br/> <class name="compbio.engine.cluster.drmaa.UtilTester"/><br/> <class name="compbio.engine.cluster.drmaa._DrmaaExample"/><br/> <class name="compbio.engine.cluster.drmaa._JobStatus"/><br/> <class name="compbio.engine.cluster.dundee._Queue$1"/><br/> <class name="compbio.engine.cluster.dundee._Queue"/><br/> <class name="compbio.engine.cluster.dundee._QueueConstraints"/><br/> <class name="compbio.engine.cluster.dundee._QueueTester"/><br/> <class name="compbio.engine.conf.DirectoryManager"/><br/> <class name="compbio.engine.conf.DirectoryManagerTester"/><br/> <class name="compbio.engine.conf.PropertyHelperManager"/><br/> <class name="compbio.engine.conf.PropertyHelperManagerTester"/><br/> <class name="compbio.engine.conf.RunnerConfigMarshaller$MySchemaOutputResolver"/><br/> <class name="compbio.engine.conf.RunnerConfigMarshaller"/><br/> <class name="compbio.engine.conf.RunnerConfigMarshallerTester"/><br/> <class name="compbio.engine.conf._Key"/><br/> <class name="compbio.engine.local.AsyncLocalRunner"/><br/> <class name="compbio.engine.local.AsyncLocalRunnerTester"/><br/> <class name="compbio.engine.local.EngineResourcesLeakTester"/><br/> <class name="compbio.engine.local.ExecutableWrapper$1"/><br/> <class name="compbio.engine.local.ExecutableWrapper"/><br/> <class name="compbio.engine.local.LocalEngineUtil"/><br/> <class name="compbio.engine.local.LocalExecutorService$1"/><br/> <class name="compbio.engine.local.LocalExecutorService"/><br/> <class name="compbio.engine.local.LocalRunner"/><br/> <class name="compbio.engine.local.LocalRunnerTester"/><br/> <class name="compbio.engine.local.StreamGobbler$OutputType"/><br/> <class name="compbio.engine.local.StreamGobbler"/><br/> <class name="compbio.engine.local._TrackingExecutor$1"/><br/> <class name="compbio.engine.local._TrackingExecutor$2"/><br/> <class name="compbio.engine.local._TrackingExecutor"/><br/> <class name="compbio.metadata.AllTestSuit"/><br/> <class name="compbio.metadata.Argument"/><br/> <class name="compbio.metadata.ChunkHolder"/><br/> <class name="compbio.metadata.JobExecutionException"/><br/> <class name="compbio.metadata.JobStatus"/><br/> <class name="compbio.metadata.JobSubmissionException"/><br/> <class name="compbio.metadata.Limit"/><br/> <class name="compbio.metadata.LimitExceededException"/><br/> <class name="compbio.metadata.LimitsManager"/><br/> <class name="compbio.metadata.Option"/><br/> <class name="compbio.metadata.OptionCombinatorTester"/><br/> <class name="compbio.metadata.OptionMarshallerTester"/><br/> <class name="compbio.metadata.Parameter"/><br/> <class name="compbio.metadata.Preset"/><br/> <class name="compbio.metadata.PresetManager"/><br/> <class name="compbio.metadata.PresetTester"/><br/> <class name="compbio.metadata.ResultNotAvailableException"/><br/> <class name="compbio.metadata.RunnerConfig"/><br/> <class name="compbio.metadata.RunnerConfigTester"/><br/> <class name="compbio.metadata.UnsupportedRuntimeException"/><br/> <class name="compbio.metadata.ValueConstrain$1"/><br/> <class name="compbio.metadata.ValueConstrain$Type"/><br/> <class name="compbio.metadata.ValueConstrain"/><br/> <class name="compbio.metadata.WrongParameterException"/><br/> <class name="compbio.pipeline._jpred.BlastParser$Psiseq"/><br/> <class name="compbio.pipeline._jpred.BlastParser"/><br/> <class name="compbio.pipeline._jpred.Jpred4"/><br/> <class name="compbio.pipeline._jpred.PScore"/><br/> <class name="compbio.pipeline._jpred.Pairwise"/><br/> <class name="compbio.runner.OptionCombinator"/><br/> <class name="compbio.runner.Util"/><br/> <class name="compbio.runner._NativeSpecHelper"/><br/> <class name="compbio.runner._SkeletalCommandBuilder"/><br/> <class name="compbio.runner._impl.BlastAll$blastType"/><br/> <class name="compbio.runner._impl.BlastAll$dataBase"/><br/> <class name="compbio.runner._impl.BlastAll"/><br/> <class name="compbio.runner._impl.BlastParameters"/><br/> <class name="compbio.runner._impl.DisEMBLTester"/><br/> <class name="compbio.runner._impl.Disembl"/><br/> <class name="compbio.runner._impl.Environment"/><br/> <class name="compbio.runner._impl.Mcl"/><br/> <class name="compbio.runner._impl.MclTester"/><br/> <class name="compbio.runner._impl.NetNglyc"/><br/> <class name="compbio.runner._impl.NetNglycTester"/><br/> <class name="compbio.runner._impl.OB"/><br/> <class name="compbio.runner._impl.OBTester"/><br/> <class name="compbio.runner._impl.PSIBlast$blastType"/><br/> <class name="compbio.runner._impl.PSIBlast$dataBase"/><br/> <class name="compbio.runner._impl.PSIBlast"/><br/> <class name="compbio.runner._impl.RPSBlast$DB"/><br/> <class name="compbio.runner._impl.RPSBlast"/><br/> <class name="compbio.runner._impl.RPSBlastTester"/><br/> <class name="compbio.runner._impl.Ronn"/><br/> <class name="compbio.runner._impl.RonnTester"/><br/> <class name="compbio.runner._impl.Runners"/><br/> <class name="compbio.runner._impl.Tmhmm2"/><br/> <class name="compbio.runner._impl.Tmhmm2Tester"/><br/> <class name="compbio.runner._jpred._Jpred"/><br/> <class name="compbio.runner.msa.ClustalW"/><br/> <class name="compbio.runner.msa.ClustalWParametersTester"/><br/> <class name="compbio.runner.msa.ClustalWTester"/><br/> <class name="compbio.runner.msa.LimitTester"/><br/> <class name="compbio.runner.msa.Mafft"/><br/> <class name="compbio.runner.msa.MafftParametersTester"/><br/> <class name="compbio.runner.msa.MafftTester"/><br/> <class name="compbio.runner.msa.Muscle"/><br/> <class name="compbio.runner.msa.MuscleParametersTester"/><br/> <class name="compbio.runner.msa.MuscleTester"/><br/> <class name="compbio.runner.msa.Probcons"/><br/> <class name="compbio.runner.msa.ProbconsParametersTester"/><br/> <class name="compbio.runner.msa.ProbconsTester"/><br/> <class name="compbio.runner.msa.Tcoffee"/><br/> <class name="compbio.runner.msa.TcoffeeParametersTester"/><br/> <class name="compbio.runner.msa.TcoffeeTester"/><br/> <class name="compbio.runner.psiblast.PsiBlast"/><br/> <class name="compbio.ws.client.Jws2Client$Services"/><br/> <class name="compbio.ws.client.Jws2Client"/><br/> <class name="compbio.ws.client.WSTester"/><br/> <class name="compbio.ws.server.ClustalWS"/><br/> <class name="compbio.ws.server.MafftWS"/><br/> <class name="compbio.ws.server.MuscleWS"/><br/> <class name="compbio.ws.server.ProbconsWS"/><br/> <class name="compbio.ws.server.SimpleWSPublisher"/><br/> <class name="compbio.ws.server.TcoffeeWS"/><br/> <class name="compbio.ws.server.WSUtil"/><br/> </classes><br/> </test><br/></suite><br/></tt></body></html>