testsrc/testdata/jobs/@ClustalW#1207771971786965/RunnerConfig.xml

   1 <?xml version="1.0" encoding="UTF-8" standalone="yes"?>
   2 <runConfiguration>
   3     <taskId>@ClustalW#1207771971786965</taskId>
   4     <workDirectory>/cluster/gjb_lab/fc/www-jws2/jaba/jobsout/@ClustalW#1207771971786965</workDirectory>
   5     <parameters>
   6         <paramList>
   7             <entry>
   8                 <key>-OUTORDER</key>
   9                 <value>
  10                     <position>-1</position>
  11                     <name>-OUTORDER</name>
  12                     <value>ALIGNED</value>
  13                 </value>
  14             </entry>
  15             <entry>
  16                 <key>-QUIET</key>
  17                 <value>
  18                     <position>-1</position>
  19                     <name>-QUIET</name>
  20                 </value>
  21             </entry>
  22             <entry>
  23                 <key>-STATS</key>
  24                 <value>
  25                     <position>-1</position>
  26                     <name>-STATS</name>
  27                     <value>stat.log</value>
  28                 </value>
  29             </entry>
  30             <entry>
  31                 <key>-INFILE</key>
  32                 <value>
  33                     <position>-1</position>
  34                     <name>-INFILE</name>
  35                     <value>input.txt</value>
  36                 </value>
  37             </entry>
  38             <entry>
  39                 <key>-OUTFILE</key>
  40                 <value>
  41                     <position>-1</position>
  42                     <name>-OUTFILE</name>
  43                     <value>output.txt</value>
  44                 </value>
  45             </entry>
  46         </paramList>
  47         <nameValueSeparator>=</nameValueSeparator>
  48     </parameters>
  49     <error>error.txt</error>
  50     <output>output.txt</output>
  51     <input>/cluster/gjb_lab/fc/www-jws2/jaba/jobsout/@ClustalW#1207771971786965/input.txt</input>
  52     <runnerClassName>compbio.runner.msa.ClustalW</runnerClassName>
  53 </runConfiguration>