testsrc/testdata/jobs/@Mafft#4314628912632965/RunnerConfig.xml

   1 <?xml version="1.0" encoding="UTF-8" standalone="yes"?>
   2 <runConfiguration>
   3     <taskId>@Mafft#4314628912632965</taskId>
   4     <workDirectory>/cluster/gjb_lab/fc/www-jws2/jaba/jobsout/@Mafft#4314628912632965</workDirectory>
   5     <parameters>
   6         <paramList>
   7             <entry>
   8                 <key>--clustalout</key>
   9                 <value>
  10                     <position>-1</position>
  11                     <name>--clustalout</name>
  12                 </value>
  13             </entry>
  14             <entry>
  15                 <key>fasta.in</key>
  16                 <value>
  17                     <position>-100</position>
  18                     <name>fasta.in</name>
  19                 </value>
  20             </entry>
  21             <entry>
  22                 <key>--globalpair</key>
  23                 <value>
  24                     <position>-1</position>
  25                     <name>--globalpair</name>
  26                 </value>
  27             </entry>
  28             <entry>
  29                 <key>--maxiterate</key>
  30                 <value>
  31                     <position>-1</position>
  32                     <name>--maxiterate</name>
  33                     <value>1000</value>
  34                 </value>
  35             </entry>
  36         </paramList>
  37         <nameValueSeparator> </nameValueSeparator>
  38     </parameters>
  39     <error>error.txt</error>
  40     <output>fasta.out</output>
  41     <input>/cluster/gjb_lab/fc/www-jws2/jaba/jobsout/@Mafft#4314628912632965/fasta.in</input>
  42     <runnerClassName>compbio.runner.msa.Mafft</runnerClassName>
  43 </runConfiguration>