3 Gap Penalty = -1.53, +0.00, +0.00
7 Making a distance matrix ..
8 \r 1 / 35
\r 11 / 35
\r 21 / 35
\r 31 / 35
11 Constructing a UPGMA tree ...
12 \r 0 / 35
\r 10 / 35
\r 20 / 35
\r 30 / 35
15 Progressive alignment ...
16 \rSTEP 1 / 34 f
\rSTEP 2 / 34 f
\rSTEP 3 / 34 f
\rSTEP 4 / 34 f
\rSTEP 5 / 34 f
\rSTEP 6 / 34 f
\rSTEP 7 / 34 f
\rSTEP 8 / 34 d
\rSTEP 9 / 34 d
\rSTEP 10 / 34 f
\rSTEP 11 / 34 d
\rSTEP 12 / 34 f
\rSTEP 13 / 34 d
\rSTEP 14 / 34 d
\rSTEP 15 / 34 d
\rSTEP 16 / 34 d
\rSTEP 17 / 34 d
\rSTEP 18 / 34 d
\rSTEP 19 / 34 f
\rSTEP 20 / 34 d
\rSTEP 21 / 34 d
\rSTEP 22 / 34 d
\rSTEP 23 / 34 d
\rSTEP 24 / 34 d
\rSTEP 25 / 34 f
\rSTEP 26 / 34 d
\rSTEP 27 / 34 d
\rSTEP 28 / 34 d
17 Reallocating..done. *alloclen = 2455
18 \rSTEP 29 / 34 d
\rSTEP 30 / 34 d
\rSTEP 31 / 34 d
\rSTEP 32 / 34 d
\rSTEP 33 / 34 d
\rSTEP 34 / 34 d
21 disttbfast (aa) Version 6.713b alg=A, model=BLOSUM62, 1.530, -0.000, -0.000
22 blosum 62 / kimura 200
25 Gap Penalty = -1.53, +0.00, +0.00
26 Making a distance matrix ..
27 \r 0 / 34
\r 10 / 34
\r 20 / 34
\r 30 / 34
30 Constructing a UPGMA tree ...
31 \r 0 / 35
\r 10 / 35
\r 20 / 35
\r 30 / 35
34 Progressive alignment ...
35 \rSTEP 1 /34 f
\rSTEP 2 /34 f
\rSTEP 3 /34 f
\rSTEP 4 /34 f
\rSTEP 5 /34 f
\rSTEP 6 /34 f
\rSTEP 7 /34 d
\rSTEP 8 /34 f
\rSTEP 9 /34 d
\rSTEP 10 /34 f
\rSTEP 11 /34 d
\rSTEP 12 /34 d
\rSTEP 13 /34 d
\rSTEP 14 /34 f
\rSTEP 15 /34 d
\rSTEP 16 /34 f
\rSTEP 17 /34 d
\rSTEP 18 /34 d
\rSTEP 19 /34 d
\rSTEP 20 /34 d
\rSTEP 21 /34 f
\rSTEP 22 /34 d
\rSTEP 23 /34 d
\rSTEP 24 /34 d
\rSTEP 25 /34 d
\rSTEP 26 /34 d
\rSTEP 27 /34 d
\rSTEP 28 /34 d
\rSTEP 29 /34 d
\rSTEP 30 /34 d
\rSTEP 31 /34 d
\rSTEP 32 /34 d
\rSTEP 33 /34 d
\rSTEP 34 /34 d
37 tbfast (aa) Version 6.713b alg=A, model=BLOSUM62, 1.530, -0.000, -0.000
44 FFT-NS-2 (Fast but rough)
45 Progressive method (guide trees were built 2 times.)
47 If unsure which option to use, try 'mafft --auto input > output'.
48 If the possibility of long gaps can be excluded, add '--ep 0.123'.
49 For more information, see 'mafft --help', 'mafft --man' and the mafft page.