testsrc/testdata/jobs/@Muscle#1362945636470965/RunnerConfig.xml

   1 <?xml version="1.0" encoding="UTF-8" standalone="yes"?>
   2 <runConfiguration>
   3     <taskId>@Muscle#1362945636470965</taskId>
   4     <workDirectory>/cluster/gjb_lab/fc/www-jws2/jaba/jobsout/@Muscle#1362945636470965</workDirectory>
   5     <parameters>
   6         <paramList>
   7             <entry>
   8                 <key>-clwstrict</key>
   9                 <value>
  10                     <position>-1</position>
  11                     <name>-clwstrict</name>
  12                 </value>
  13             </entry>
  14             <entry>
  15                 <key>-quiet</key>
  16                 <value>
  17                     <position>-1</position>
  18                     <name>-quiet</name>
  19                 </value>
  20             </entry>
  21             <entry>
  22                 <key>-verbose</key>
  23                 <value>
  24                     <position>-1</position>
  25                     <name>-verbose</name>
  26                 </value>
  27             </entry>
  28             <entry>
  29                 <key>-log</key>
  30                 <value>
  31                     <position>-1</position>
  32                     <name>-log</name>
  33                     <value>stat.log</value>
  34                 </value>
  35             </entry>
  36             <entry>
  37                 <key>-in</key>
  38                 <value>
  39                     <position>-1</position>
  40                     <name>-in</name>
  41                     <value>fasta.in</value>
  42                 </value>
  43             </entry>
  44             <entry>
  45                 <key>-out</key>
  46                 <value>
  47                     <position>-1</position>
  48                     <name>-out</name>
  49                     <value>fasta.out</value>
  50                 </value>
  51             </entry>
  52         </paramList>
  53         <nameValueSeparator> </nameValueSeparator>
  54     </parameters>
  55     <error>error.txt</error>
  56     <output>fasta.out</output>
  57     <input>/cluster/gjb_lab/fc/www-jws2/jaba/jobsout/@Muscle#1362945636470965/fasta.in</input>
  58     <runnerClassName>compbio.runner.msa.Muscle</runnerClassName>
  59 </runConfiguration>