testsrc/testdata/jobs/@Tcoffee#9974534735170965/RunnerConfig.xml

   1 <?xml version="1.0" encoding="UTF-8" standalone="yes"?>
   2 <runConfiguration>
   3     <taskId>@Tcoffee#9974534735170965</taskId>
   4     <workDirectory>/cluster/gjb_lab/fc/www-jws2/jaba/jobsout/@Tcoffee#9974534735170965</workDirectory>
   5     <parameters>
   6         <paramList>
   7             <entry>
   8                 <key>-output</key>
   9                 <value>
  10                     <position>-1</position>
  11                     <name>-output</name>
  12                     <value>clustalw</value>
  13                 </value>
  14             </entry>
  15             <entry>
  16                 <key>-seq</key>
  17                 <value>
  18                     <position>-1</position>
  19                     <name>-seq</name>
  20                     <value>fasta.in</value>
  21                 </value>
  22             </entry>
  23             <entry>
  24                 <key>-n_core</key>
  25                 <value>
  26                     <position>-1</position>
  27                     <name>-n_core</name>
  28                     <value>4</value>
  29                 </value>
  30             </entry>
  31         </paramList>
  32         <nameValueSeparator>=</nameValueSeparator>
  33     </parameters>
  34     <error>error.txt</error>
  35     <output>fasta.out</output>
  36     <input>/cluster/gjb_lab/fc/www-jws2/jaba/jobsout/@Tcoffee#9974534735170965/fasta.in</input>
  37     <runnerClassName>compbio.runner.msa.Tcoffee</runnerClassName>
  38 </runConfiguration>