testsrc/testdata/ljobs/Mafft#7868649707286965/fasta.out

   1 CLUSTAL format alignment by MAFFT FFT-NS-2 (v6.713b)
   2
   3
   4 Foobar          MTADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAV
   5 Barbar          ------------------------------------------------------------
   6 Foofriend       MTADGPRELLQLRAAVRHRPQD-VAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAV
   7
   8
   9 Foobar          ARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL
  10 Barbar          ----------------------ASDAAPEHPGIALWL-HALEDAGQAE-AAAAYTRAHQL
  11 Foofriend       ARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALED--------------HQL
  12                                       *************** *****              ***
  13
  14 Foobar          LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLAC
  15 Barbar          LPEEPYITAQLLN--------------------AVAQGVGAVEPFAFLSEDASAAE----
  16 Foofriend       LPEEPYITAQ-------------LDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLAC
  17                 **********                       ***********************
  18
  19 Foobar          ARTRAQAIAASVRPLAPTRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQM
  20 Barbar          ----------SVRPLAPTRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQM
  21 Foofriend       ARTRAQAIAASVRPLAPTRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQM
  22                           **************************************************
  23
  24 Foobar          HLFATSGDDGSTLRTRLAQASTLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEV
  25 Barbar          HLFATSGDDGSTLRTRLAQASTLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEV
  26 Foofriend       HLFATSGDDGSTLRTRLAQASTLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEV
  27                 ************************************************************
  28
  29 Foobar          FALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQGAFQPSDTSR
  30 Barbar          FALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQGAFQPSDTSR
  31 Foofriend       FALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQGAFQPSDTSR
  32                 ************************************************************
  33
  34 Foobar          VVAEPPSRTQCGLPEQGVVLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADA
  35 Barbar          VVAEPPSRTQCGLPEQGVVLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADA
  36 Foofriend       VVAEPPSRTQCGLPEQGVVLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADA
  37                 ************************************************************
  38
  39 Foobar          RLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVL
  40 Barbar          RLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVL
  41 Foofriend       RLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVL
  42                 ************************************************************
  43
  44 Foobar          TTPGETFAARVAGSLNHHLGLDEMNVADDAAFVAKA------------------------
  45 Barbar          TTPGETFAARVAGSLNHHLGLDEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRES
  46 Foofriend       TTPGETFAARVAGSLNHHLGLDEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRES
  47                 ************************************
  48
  49 Foobar          ----------------------------
  50 Barbar          GVFEMDGFADDFGALLQALARRHGWLGI
  51 Foofriend       ---------------------------I
  52