testsrc/testdata/ljobs/Muscle#1478763156946965/fasta.out

   1 CLUSTAL W (1.81) multiple sequence alignment
   2
   3 Sequence12      ----------------------------------------------VDSMVCFTQTKPGA
   4 Sequence0       ---------------------------------------------TWDG-GCWRDANPDN
   5 Sequence1       ---------------------------------------------TWDG-SCWTTQSPGA
   6 Sequence13      ---------------------------------------------YYDE-VCWVASPPGV
   7 Sequence16      SCRLLAAMATGSSDLHLELLVLVFLVTNVPAVTFLSLLLRSGCTGMWDKIACWPSADLGA
   8 Sequence17      MCDI-------ERELNKEKEACEAQMENKTA----------GCTGMWDKIACWPSADLGA
   9 Sequence7       ---------------------------------------------EWDG-ICWPRGTVGS
  10 Sequence5       ---------------------------------------------EWDG-ICWPRGSPGT
  11 Sequence6       ---------------------------------------------EWDG-ICWPQGFPGT
  12 Sequence9       ---------------------------------------------EWDG-FCWPYGTPGV
  13 Sequence8       ---------------------------------------------EWDK-TCWPNSAPGV
  14 Sequence10      ----------------------------------------------WDTVSCWPTTPAGA
  15 Sequence11      ----------------------------------------------QDEFSCWPATPEGA
  16 Sequence14      ------------------YLLTI----------------EIYCNWTWDSVLCWPPTKEDT
  17 Sequence15      -------------MSSGEYLNKTVEICVEKFKNFLPPNGEIYCNWTWDSVLCWPPTKEDT
  18 Sequence4       ---------------------------------------------TFDG-SCWNATPAGS
  19 Sequence2       ---------------------------------------------IFDE-LCWPETLGGV
  20 Sequence3       ---------------------------------------------NFDG-LCWPRTPAGL
  21                                                                *   *:     .
  22
  23 Sequence12      --YSGCPT---------------LNSSKECYMNGTW------------------------
  24 Sequence0       --YLSCPN---------------LNALKYCHSNGTW------------------------
  25 Sequence1       --IQGCPA---------------LNSAKSCTANGTW------------------------
  26 Sequence13      --ERQCPE---------------FTVTRLCMFNGSW------------------------
  27 Sequence16      EVTIPCPKYLFFFSGDALPPRSPGNLSKTCTADG-WTPVSIDYTGDCGYDPNDTVN----
  28 Sequence17      EVTIPCPKYLFFFSGDA----QPRNLSKTCTADG-WTPVSIDYTGDCGYDPNDTVN----
  29 Sequence7       --AVPCPP---------------IVAFRHCNPNGTW------------------------
  30 Sequence5       --RVPCPS---------------IHAYRTCDINGSW------------------------
  31 Sequence6       --KTPCPG---------------IHAYRRCDSNGSS------------------------
  32 Sequence9       --GAECPP---------------FHAYRHCGLSGNW------------------------
  33 Sequence8       --RLPCPE---------------ITVDRYCMSDGTW------------------------
  34 Sequence10      --VLTCPP---------------FNATRMCYPNGTW------------------------
  35 Sequence11      --TIPCPK---------------LNATRFCGEDGVW------------------------
  36 Sequence14      VAVQNCPKDYNYFKTLT------ELVYKKCLPGGRWEGRIKGHDDSPQGWTNYTTCFTPE
  37 Sequence15      VAVQNCPKDRGIDPS--------KLVYKKCLPGGRWEGRIKGHDDSPQGWTNYTTCFTPE
  38 Sequence4       --VAPCPY---------------FMAHKICTEEGTW------------------------
  39 Sequence2       --NQSCPK---------------KFAYKDCLENGSW------------------------
  40 Sequence3       --SQYCPD---------------FLAHKTCLENGSW------------------------
  41                      **                    . *   *
  42
  43 Sequence12      ------------------------------VLGRSISLFALCIAFASFCIL----RNLKM
  44 Sequence0       ------------------------------YLCNIASILLLLPAIAIFLVY----KQHRI
  45 Sequence1       ------------------------------NLLNVISIVFIIPAIVIFLAF----QQNRV
  46 Sequence13      ------------------------------ILGYSLSFTTLLGAFVILVYF----RCVRN
  47 Sequence16      --------HEVSRDEVHVQESFYNAVKVGYTVGHSVSLVSLTVGVIILCVF-RKIHCTRN
  48 Sequence17      --------HE-------VQESFYNAVKVGYTVGHSVSLVSLTVGVIILCVF-RKLHCTRN
  49 Sequence7       ------------------------------VMGYSISFGSLAVAILIIGYF----HCTRN
  50 Sequence5       ------------------------------VIGYAVSFSSLMVAILIMGFF----HCTRN
  51 Sequence6       ------------------------------IMGYAVSFSSLLVAIFIIGYF----HCTRN
  52 Sequence9       ------------------------------KIGYSISLVSLFIAFIILARF----HCTRN
  53 Sequence8       ------------------------------SLGYSFSLVALVFAMIILAYF----HCTRN
  54 Sequence10      ------------------------------VIGFTTSIVALIVALCIFLYF----RCLRN
  55 Sequence11      ------------------------------IIGFIITTIALVAALIIFLYF----RCLRN
  56 Sequence14      TWQLFKMLYADSEDTAKIKLDIAEKTRTLEIVGFSVSLIALLFSLAIFFRFRRGLRNSRT
  57 Sequence15      TWQLFKMLYADSEDTAKIKLDIAEKTRTLEIVGFSVSLIALLFSLAIFFRF-RGLRNSRT
  58 Sequence4       ------------------------------YIGYSVSLIALVMSLAILIAF----KCTRI
  59 Sequence2       ------------------------------FVGYSISLAALVISLAIFFTF----KCTRI
  60 Sequence3       ------------------------------YVGYALSLLALLISIIIFLGF----RCTRI
  61                                                :    :   :  ..  :       .  .
  62
  63 Sequence12      IIHWNFVMSLIIRNVTWF--------------LL-------F------------------
  64 Sequence0       RLHISFFLSFILSDVTAI--------------LW-------D------------------
  65 Sequence1       KVHIHLLIALGLCSFVTM--------------LW-------Y------------------
  66 Sequence13      YIHLNLVTSFLLLYLIFF--------------LM-------I------------------
  67 Sequence16      YIHIHLFVAFILKAVTVF--------------IK-------DVVLFGVGETMKCRFRSER
  68 Sequence17      YIHIHLFVAFILKAVTVF--------------IK-------DVVLFGVGETMKCQ-----
  69 Sequence7       YIHMHLFVSFMLRATSIF--------------VK-------D------------------
  70 Sequence5       YIHMHLFLSFMLRAVSIF--------------VK-------D------------------
  71 Sequence6       YIHMHLFVSFMLRAASIF--------------VK-------D------------------
  72 Sequence9       YVHMHLFVSYMLRAFFIL--------------LR-------D------------------
  73 Sequence8       YIHMHLFASFILRAVVIF--------------VK-------D------------------
  74 Sequence10      TIHCHLIVTFIFKYILWL--------------IM-------N------------------
  75 Sequence11      VIHCHLIVTFILRHILWV--------------IM-------H------------------
  76 Sequence14      RIHKNLFIAMEIQVVVRLSLYIDQVIVKE--FFFQ-----PF------------------
  77 Sequence15      RIHKNLFIAMEIQVVVRLSLYIDQVIVKEKINFWQGIHDTPF------------------
  78 Sequence4       YIHRNLFASFIINNAMWL--------------LW-------Y------------------
  79 Sequence2       RIHIQLFISFALNNLMWI--------------IW-------Y------------------
  80 Sequence3       RIHVHLFASLACTCVAWI--------------LW-------Y------------------
  81                  :*  :. :        .              .
  82
  83 Sequence12      ----------------------GCRVFAILFNYALIVTFSWMMVEGIMIHRKLES--FMS
  84 Sequence0       ----------------------VCKALSFFRIYCKSTNYVWMFCEGFYLHRLISN--FKP
  85 Sequence1       ----------------------ACQVLAVLKLYLSSSTYWWMLCEGIYLHRLLVN--FHP
  86 Sequence13      ----------------------ICRLQATALFYINLTSFFWMFVEGLYLHTMVVR--LAV
  87 Sequence16      QRFYGLTVVFMLNASIRLVFQVGCKAVMVFFHYGIMASFFWLLVEGLYLHTLLAVS-FFS
  88 Sequence17      -------------------ATVGCKAVMVFFHYGIMASFFWLLVEGLYLHTLLAVS-FFS
  89 Sequence7       ----------------------RCKIAVVMFIYFLATNYYWILVEGLYLHNLIFV--FFS
  90 Sequence5       ----------------------RCKVTVVLFIYFLATNYFWILVEGLYLHSLIFM--FRT
  91 Sequence6       ----------------------HCKVTVLLFIYFLATNYYWILVEGLYLHSLIFM--FLS
  92 Sequence9       ----------------------ACKLLYTCFMYFMATNYFWILVEGLYLHNLIFV--VFS
  93 Sequence8       ----------------------RCKLVMTLFHYFVATNYYWILVEALYLHSLIFV--FFS
  94 Sequence10      ----------------------NCKIIVALYNYIQVANFFWMLVEGLYLHTMIVW--FSI
  95 Sequence11      ----------------------NCKLIVTVYNYLHGTNFFWMFVEGLYLFTIIVW--YSA
  96 Sequence14      ----------------------LCEISYILLEYARTAMFMWMFVEGLYLHNMISVTVFHK
  97 Sequence15      ----------------------LCEISYILLEYARTAMFMWMFVEGLYLHNMITVTVFHK
  98 Sequence4       ----------------------KCKILHVLLHYFLVSNYFWMFCEGLYLHTVLVV--FLS
  99 Sequence2       ----------------------KCQALHLVVHYLMLANYMWMFCEGLHLHLALVV--FVR
 100 Sequence3       ----------------------RCIGLHLVVHYFMLVNYFWMFCEGLHLHLVLVV--FVK
 101                                        *        *     : *:: *.: :.  :
 102
 103 Sequence12      MASRCV---LLGW---IPIMMFWAILKE----NKDNH--------DYIYLVPIGIVLLIN
 104 Sequence0       PKLPLY---LTGW---MIYSVIYAALRA----NESCW--------EWIIYAPNLLCLVVN
 105 Sequence1       PKLMFC---VLGW---AVCIVIYAAIRS----NTHCW--------EWIVYAPNLLCLIVN
 106 Sequence13      RRKVYC---LIGW---VIFSVAYAITVA----TGTCL--------EYIIRVPIIAVILVN
 107 Sequence16      ERKYFWGYILIGWGAPPVFIAAWVITKA-CLNDDRCWDIIDDTL-WWIIKTPILVTILVN
 108 Sequence17      ERKYFWGYILIGWGAPPVFIAAWVITKA-CLNDPGCWDIIDDTL-WWIIKTPILVTILVN
 109 Sequence7       DTYGFI---LIGW---AAFVAAWAVARA----DARCW--------KWIYQAPILAAIGLN
 110 Sequence5       ANYGFI---LMGW---AVFVAVWAIVRA----DARCW--------KWIYQVPILMAIALN
 111 Sequence6       DSYGFT---LIGW---AVFVAAWAVVRA----DARCW--------KWIYQVPILTAIGLN
 112 Sequence9       ERFGFI---AIGW---LTFVVPWVVVRE----DTGCW--------KWIYKAPIVVSIVVN
 113 Sequence8       DKYRFS---VTGW---ILFVVPWAIVRD----DTACW--------KWIYNGPIVVANVIN
 114 Sequence10      ERRYYA---VLGW---ALVVLAWAIVKE----NRRPM--------DYIYITPILGVLLVN
 115 Sequence11      DKRYYV---IIGWG--LLFLLVDVMLSF----SPV----------DYILHAPIFFVLVSN
 116 Sequence14      EQSYYTMYSIIGWGSPIIITSAWILVMITYYKTSKCWWGYNLTIYFWILEGPRLTVVVVN
 117 Sequence15      EQSYYTMYSIIGWGSPIIITSAWILVMITYYKTSKCWWGYNLTIYFWILEGPRLTVVVLN
 118 Sequence4       ENSWFH---LIGW---AVVTSIYAGVRI----PEECW--------TWILSGPVCLSMLTN
 119 Sequence2       DAEWFF---ALGW---FIIVLIYSVVRI----LKDCW--------SWILTAPVCISLLVS
 120 Sequence3       DTIWFI---VISW---IPIAIVYGLARS----SPDCW--------LWIFSVPITLSLLAS
 121                            .*                                 :*   *       .
 122
 123 Sequence12      GFIFCNFVCIL----------------AKCVSKAFVFYFSLLGLTYLI------------
 124 Sequence0       LFFLCNILRVL----------------VTQALKATFVLIPLFGIQLFV------------
 125 Sequence1       MATLVNILRIL----------------LFKGVKAAFMLIPLFGLQMLL------------
 126 Sequence13      VCFMVHIMIIL----------------VTKGVRGIVVLLPLLGASYFM------------
 127 Sequence16      FFLFIRIIRILRQKMNCPDIGRKESH-LRRLAKSTLLLIPLFGINYII------------
 128 Sequence17      FFLFIRIIRILRQKMNCPDIGRKESHQCSRLAKSTLLLIPLFGINYII------------
 129 Sequence7       FILFLNTVRVL----------------ATKLAKSTLVLVLVFGVHYIV------------
 130 Sequence5       FILFVNIVRVL----------------ATKLAKSTLVLVLVFGIHYII------------
 131 Sequence6       FILFVNIVRVL----------------ATKLAKSTQVLVFVFGVHYIV------------
 132 Sequence9       FLLFLNILRVL----------------VKKLAKSTMVLIPLFGVHYIV------------
 133 Sequence8       FLLFLNIIRVL----------------WYKLAKSTLVLIPMFGVHAIV------------
 134 Sequence10      VIFLGSIVWVL----------------ITKAVRATLILFPLLGVTYVV------------
 135 Sequence11      IFFLSAIIWVL----------------ITKAVKATIILFPLLGVTYVL------------
 136 Sequence14      FLFLLNIIRVLVVKLRQSKQTEIKRSSFRKAVRATAVLLPLLGITNIISMSKSPLEKSVW
 137 Sequence15      FLFLLNIIRVLVVKLRQSRKSEIEQ--VRKAVRATAVLLPLLGITNIISMSKSPLEKSVW
 138 Sequence4       AFFLVNIVRVL----------------VTKNCKATLILLPLLGLHYVV------------
 139 Sequence2       LIFLINVLRVI----------------LTIAARAALILIPLFGLQHIL------------
 140 Sequence3       FIFLINVLRVI----------------VRKAVRATIILVPLFGLQHFL------------
 141                    :   : ::                     ..  . . ::*   .:
 142
 143 Sequence12      --FMF----------IYTNVILESFQGFFICLFHCFCNTHMR------------------
 144 Sequence0       --TLY----------EKFTTFVINSQGFFVALIFCFCNGEVR------------------
 145 Sequence1       --TIY----------EYFTFIVTNSQGIFVAVIFCYLNGEVI------------------
 146 Sequence13      --LLY----------RYLNAFLQSTQGFFVAIIYVYMNQEVQ------------------
 147 Sequence16      --FAFLPDHIQTKGRLVFDLILGSFQSFVVVVLYCFLNGEVQAEIKRKWRRWTLQRFLGA
 148 Sequence17      --FAFLPDHIQTKGRLVFDLILGSFQGFVVVVLYCFLNGEVQAEIKRKWRRWTLQRFLGA
 149 Sequence7       --FVR----------MHCELFFNSFQGFFVSIIYCYCNGEVQ------------------
 150 Sequence5       --FVR----------MYCELFFNSFQGFFVSIIYCYCNGEVQ------------------
 151 Sequence6       --FVR----------MYCELFFNSFQGFFVSIIYCYCNGEVQ------------------
 152 Sequence9       --FVR----------LYFELFFNSFQGFFVSILYCFLNGEVR------------------
 153 Sequence8       --FIR----------MSFDLFFNSFQGFFVAIIYCFCNGEVQ------------------
 154 Sequence10      --FIF----------VYFNAILQSLQGLAIAVFYCFLNGEVR------------------
 155 Sequence11      --FLF----------KYANALLQSFQGLFVAVFYCFLNGEVR------------------
 156 Sequence14      EFALW----------SYGTHFLTSFQGFFIAFLYCFLNGEVRQVLRKRKRKRRRRK----
 157 Sequence15      EFALW----------SYGTHFLTSFQGFFIAFLYCFLNGEVRAVVMKSVSTYFSLRNNQQ
 158 Sequence4       --MPY----------QIVSAIFTSFQGLCVAFLFCFCNGEVL------------------
 159 Sequence2       --IPY----------QYVTVVVVTLQGLCVSCLFCFANQDVH------------------
 160 Sequence3       --LPY----------QMLSVVLVSLQGFVVSFLFCFANHDVT------------------
 161                                     .. . *.: :  :. : *  :
 162
 163 Sequence12      -------------------------------------------
 164 Sequence0       -------------------------------------------
 165 Sequence1       -------------------------------------------
 166 Sequence13      -------------------------------------------
 167 Sequence16      -------------------------------------------
 168 Sequence17      DTRYQQPSIGSNGNNFSTQITVTIRSSPATRRASECREHLPAI
 169 Sequence7       -------------------------------------------
 170 Sequence5       -------------------------------------------
 171 Sequence6       -------------------------------------------
 172 Sequence9       -------------------------------------------
 173 Sequence8       -------------------------------------------
 174 Sequence10      -------------------------------------------
 175 Sequence11      -------------------------------------------
 176 Sequence14      -------------------------------------------
 177 Sequence15      HKQFQHHKQSTSKTTTNDKTNGKQIENQNDDVNDAQWKRTRV-
 178 Sequence4       -------------------------------------------
 179 Sequence2       -------------------------------------------
 180 Sequence3       -------------------------------------------
 181