testsrc/testdata/ljobs/Probcons#808615105294204/RunnerConfig.xml

   1 <?xml version="1.0" encoding="UTF-8" standalone="yes"?>
   2 <runConfiguration>
   3     <taskId>Probcons#808615105294204</taskId>
   4     <workDirectory>/cluster/gjb_lab/fc/www-jws2/jaba/local_jobsout/Probcons#808615105294204</workDirectory>
   5     <parameters>
   6         <paramList>
   7             <entry>
   8                 <key>-v</key>
   9                 <value>
  10                     <position>-1</position>
  11                     <name>-v</name>
  12                 </value>
  13             </entry>
  14             <entry>
  15                 <key>-clustalw</key>
  16                 <value>
  17                     <position>-1</position>
  18                     <name>-clustalw</name>
  19                 </value>
  20             </entry>
  21             <entry>
  22                 <key>-annot</key>
  23                 <value>
  24                     <position>-1</position>
  25                     <name>-annot</name>
  26                 </value>
  27             </entry>
  28             <entry>
  29                 <key>annotation.txt</key>
  30                 <value>
  31                     <position>-1</position>
  32                     <name>annotation.txt</name>
  33                 </value>
  34             </entry>
  35             <entry>
  36                 <key>fasta.in</key>
  37                 <value>
  38                     <position>-1</position>
  39                     <name>fasta.in</name>
  40                 </value>
  41             </entry>
  42         </paramList>
  43         <nameValueSeparator> </nameValueSeparator>
  44     </parameters>
  45     <error>error.txt</error>
  46     <output>alignment.out</output>
  47     <input>/cluster/gjb_lab/fc/www-jws2/jaba/local_jobsout/Probcons#808615105294204/fasta.in</input>
  48     <runnerClassName>compbio.runner.msa.Probcons</runnerClassName>
  49 </runConfiguration>