1 /*********************************************************************
2 * Clustal Omega - Multiple sequence alignment
4 * Copyright (C) 2010 University College Dublin
6 * Clustal-Omega is free software; you can redistribute it and/or
7 * modify it under the terms of the GNU General Public License as
8 * published by the Free Software Foundation; either version 2 of the
9 * License, or (at your option) any later version.
11 * This file is part of Clustal-Omega.
13 ********************************************************************/
16 * RCS $Id: tree.h 193 2011-02-07 15:45:21Z andreas $
19 #ifndef CLUSTALO_TREE_H
20 #define CLUSTALO_TREE_H
22 #include "symmatrix.h"
23 #include "muscle_tree.h"
26 enum {LEFT_NODE = 0, RGHT_NODE, PRNT_NODE, DIFF_NODE};
29 GuideTreeUpgma(tree_t **tree,
30 char **labels, symmatrix_t *tmat, char *ftree);
33 GuideTreeFromFile(tree_t **tree,
34 mseq_t *mseq, char *ftree);
37 TraverseTree(int **piOrderLR_p,
38 tree_t *tree, mseq_t *mseq);