1 <web-app xmlns="http://java.sun.com/xml/ns/j2ee"
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2 xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
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3 xsi:schemaLocation="http://java.sun.com/xml/ns/j2ee http://java.sun.com/xml/ns/j2ee/web-app_2_4.xsd"
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6 <display-name>JABAWS</display-name>
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7 <description>JAva Bioinformatics Analysis Web Services (JABAWS) v.2</description>
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10 <listener-class>compbio.ws.server.ShutdownEngines</listener-class>
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13 <listener-class>compbio.stat.servlet.StatisticCollector</listener-class>
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16 <listener-class>com.sun.xml.ws.transport.http.servlet.WSServletContextListener</listener-class>
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19 <!-- Session timeout in minutes -->
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21 <session-timeout>20</session-timeout>
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25 <display-name>This is a standard tomcat 'default' servlet for making listings</display-name>
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26 <servlet-name>listings</servlet-name>
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27 <servlet-class>org.apache.catalina.servlets.DefaultServlet</servlet-class>
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29 <param-name>debug</param-name>
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30 <param-value>0</param-value>
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33 <param-name>readonly</param-name>
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34 <param-value>true</param-value>
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37 <param-name>listings</param-name>
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38 <param-value>true</param-value>
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40 <load-on-startup>1</load-on-startup>
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44 <description>Display pre-calculated accounting info</description>
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45 <servlet-name>DisplayStat</servlet-name>
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46 <servlet-class>compbio.stat.servlet.DisplayStat</servlet-class>
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50 <description>Display job list</description>
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51 <servlet-name>Joblist</servlet-name>
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52 <servlet-class>compbio.stat.servlet.Joblist</servlet-class>
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56 <description>Display monthly summary statistics</description>
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57 <servlet-name>AnnualStat</servlet-name>
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58 <servlet-class>compbio.stat.servlet.AnnualStat</servlet-class>
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62 <servlet-name>ClustalWS</servlet-name>
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63 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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64 <load-on-startup>1</load-on-startup>
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68 <servlet-name>MuscleWS</servlet-name>
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69 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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70 <load-on-startup>1</load-on-startup>
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74 <servlet-name>MafftWS</servlet-name>
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75 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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76 <load-on-startup>1</load-on-startup>
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80 <servlet-name>TcoffeeWS</servlet-name>
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81 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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82 <load-on-startup>1</load-on-startup>
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86 <servlet-name>ProbconsWS</servlet-name>
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87 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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88 <load-on-startup>1</load-on-startup>
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92 <servlet-name>AAConWS</servlet-name>
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93 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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94 <load-on-startup>1</load-on-startup>
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98 <servlet-name>JronnWS</servlet-name>
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99 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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100 <load-on-startup>1</load-on-startup>
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104 <servlet-name>DisemblWS</servlet-name>
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105 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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106 <load-on-startup>1</load-on-startup>
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110 <servlet-name>GlobPlotWS</servlet-name>
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111 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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112 <load-on-startup>1</load-on-startup>
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116 <servlet-name>listings</servlet-name>
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117 <url-pattern>/</url-pattern>
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121 <servlet-name>DisplayStat</servlet-name>
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122 <url-pattern>/DisplayStat</url-pattern>
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126 <servlet-name>AnnualStat</servlet-name>
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127 <url-pattern>/AnnualStat</url-pattern>
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128 </servlet-mapping>
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131 <servlet-name>Joblist</servlet-name>
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132 <url-pattern>/Joblist</url-pattern>
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133 </servlet-mapping>
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136 <servlet-name>ClustalWS</servlet-name>
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137 <url-pattern>/ClustalWS</url-pattern>
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141 <servlet-name>MuscleWS</servlet-name>
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142 <url-pattern>/MuscleWS</url-pattern>
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146 <servlet-name>MafftWS</servlet-name>
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147 <url-pattern>/MafftWS</url-pattern>
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151 <servlet-name>TcoffeeWS</servlet-name>
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152 <url-pattern>/TcoffeeWS</url-pattern>
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156 <servlet-name>ProbconsWS</servlet-name>
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157 <url-pattern>/ProbconsWS</url-pattern>
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161 <servlet-name>AAConWS</servlet-name>
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162 <url-pattern>/AAConWS</url-pattern>
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166 <servlet-name>JronnWS</servlet-name>
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167 <url-pattern>/JronnWS</url-pattern>
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171 <servlet-name>DisemblWS</servlet-name>
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172 <url-pattern>/DisemblWS</url-pattern>
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176 <servlet-name>GlobPlotWS</servlet-name>
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177 <url-pattern>/GlobPlotWS</url-pattern>
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180 <security-constraint>
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181 <web-resource-collection>
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182 <web-resource-name>Administrator pages</web-resource-name>
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183 <!-- Prohibit access to any resources -->
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184 <url-pattern>/</url-pattern>
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185 <url-pattern>/DisplayStat</url-pattern>
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186 <url-pattern>/Joblist</url-pattern>
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187 <url-pattern>/AnnualStat</url-pattern>
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188 <url-pattern>/conf/*</url-pattern>
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189 <url-pattern>/binaries/*</url-pattern>
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190 <url-pattern>/jobsout/*</url-pattern>
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191 <url-pattern>/testsrc/*</url-pattern>
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192 <url-pattern>/lib/*</url-pattern>
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193 <url-pattern>/test-output/*</url-pattern>
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194 <!-- No http-method means all methods are constrained -->
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195 </web-resource-collection>
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197 <role-name>admin</role-name>
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199 </security-constraint>
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201 <!-- unsupported HTTP methods -->
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202 <security-constraint>
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203 <web-resource-collection>
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204 <web-resource-name>unsupported HTTP methods</web-resource-name>
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205 <url-pattern>/*</url-pattern>
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206 <http-method>PUT</http-method>
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207 <http-method>DELETE</http-method>
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208 <http-method>TRACE</http-method>
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209 <http-method>HEAD</http-method>
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210 <http-method>OPTIONS</http-method>
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211 </web-resource-collection>
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213 </security-constraint>
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214 <!-- Define the Login Configuration for this Application -->
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216 <auth-method>BASIC</auth-method>
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217 <realm-name>JABAWS administrators</realm-name>
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220 <!-- Security roles referenced by this web application -->
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223 The role that is required to log in and view JABAWS internals
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225 <role-name>admin</role-name>
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