webservices/compbio/data/msa/Category.java

   1 /**\r
   2  * Class that splits {@link Services} to categories. Services themselves have no\r
   3  * knowledge which category they belongs to.\r
   4  * \r
   5  * This class is responsible for initialization of all the categories (done\r
   6  * statically) and holds the category names as constrains.\r
   7  * \r
   8  * Two categories considered equals if their names are equals.\r
   9  * \r
  10  * @author pvtroshin\r
  11  * @version 1.0 September 2011\r
  12  */\r
  13 \r
  14 package compbio.data.msa;\r
  15 \r
  16 import java.util.HashSet;\r
  17 import java.util.Set;\r
  18 import java.util.TreeSet;\r
  19 \r
  20 import javax.xml.bind.annotation.XmlAccessType;\r
  21 import javax.xml.bind.annotation.XmlAccessorType;\r
  22 \r
  23 import compbio.ws.client.Services;\r
  24 \r
  25 @XmlAccessorType(XmlAccessType.FIELD)\r
  26 public class Category {\r
  27         /*\r
  28          * TODO refactor initialization and constrains into separate classes if\r
  29          * further complexity is expected.\r
  30          */\r
  31 \r
  32         /**\r
  33          * All of the Category names\r
  34          */\r
  35         public static final String CATEGORY_ALIGNMENT = "Alignment";\r
  36         public static final String CATEGORY_DISORDER = "Protein Disorder";\r
  37         public static final String CATEGORY_CONSERVATION = "Conservation";\r
  38         public static final String CATEGORY_PREDICTION = "Prediction";\r
  39 \r
  40         public String name;\r
  41         Set<Services> services;\r
  42 \r
  43         private Category(String name, Set<Services> services) {\r
  44                 this.name = name;\r
  45                 this.services = services;\r
  46         }\r
  47 \r
  48         private Category() {\r
  49                 // Default constructor for JAXB\r
  50         }\r
  51 \r
  52         public Set<Services> getServices() {\r
  53                 return new TreeSet<Services>(services);\r
  54         }\r
  55 \r
  56         public static Set<Category> getCategories() {\r
  57                 return init();\r
  58         }\r
  59 \r
  60         private static Set<Category> init() {\r
  61                 Set<Services> align_services = new HashSet<Services>();\r
  62                 align_services.add(Services.ClustalOWS);\r
  63                 align_services.add(Services.ClustalWS);\r
  64                 align_services.add(Services.MafftWS);\r
  65                 align_services.add(Services.MuscleWS);\r
  66                 align_services.add(Services.ProbconsWS);\r
  67                 align_services.add(Services.MSAprobsWS);\r
  68                 align_services.add(Services.GLprobsWS);\r
  69                 align_services.add(Services.TcoffeeWS);\r
  70                 Category alignment = new Category(CATEGORY_ALIGNMENT, align_services);\r
  71 \r
  72                 Set<Services> disorder_services = new HashSet<Services>();\r
  73                 disorder_services.add(Services.DisemblWS);\r
  74                 disorder_services.add(Services.GlobPlotWS);\r
  75                 disorder_services.add(Services.IUPredWS);\r
  76                 disorder_services.add(Services.JronnWS);\r
  77                 Category disorder = new Category(CATEGORY_DISORDER, disorder_services);\r
  78 \r
  79                 Set<Services> conservation_services = new HashSet<Services>();\r
  80                 conservation_services.add(Services.AAConWS);\r
  81                 Category conservation = new Category(CATEGORY_CONSERVATION, conservation_services);\r
  82 \r
  83                 Set<Services> prediction_services = new HashSet<Services>();\r
  84                 prediction_services.add(Services.JpredWS);\r
  85                 prediction_services.add(Services.RNAalifoldWS);\r
  86                 Category prediction = new Category(CATEGORY_PREDICTION, prediction_services);\r
  87 \r
  88                 Set<Category> categories = new HashSet<Category>();\r
  89                 categories.add(alignment);\r
  90                 categories.add(disorder);\r
  91                 categories.add(conservation);\r
  92                 categories.add(prediction);\r
  93 \r
  94                 return categories;\r
  95         }\r
  96 \r
  97         @Override\r
  98         public int hashCode() {\r
  99                 final int prime = 31;\r
 100                 int result = 1;\r
 101                 result = prime * result + ((name == null) ? 0 : name.hashCode());\r
 102                 return result;\r
 103         }\r
 104 \r
 105         @Override\r
 106         public boolean equals(Object obj) {\r
 107                 if (this == obj)\r
 108                         return true;\r
 109                 if (obj == null)\r
 110                         return false;\r
 111                 if (getClass() != obj.getClass())\r
 112                         return false;\r
 113                 Category other = (Category) obj;\r
 114                 if (name == null) {\r
 115                         if (other.name != null)\r
 116                                 return false;\r
 117                 } else if (!name.equals(other.name))\r
 118                         return false;\r
 119                 return true;\r
 120         }\r
 121 \r
 122 }\r