1 package compbio.ws.server;
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3 import java.util.List;
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5 import javax.jws.WebService;
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7 import org.apache.log4j.Logger;
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9 import compbio.data.msa.JABAService;
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10 import compbio.data.msa.SequenceAnnotation;
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11 import compbio.data.sequence.FastaSequence;
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12 import compbio.metadata.JobSubmissionException;
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13 import compbio.metadata.LimitExceededException;
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14 import compbio.metadata.Option;
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15 import compbio.metadata.Preset;
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16 import compbio.metadata.UnsupportedRuntimeException;
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17 import compbio.metadata.WrongParameterException;
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18 import compbio.runner.disorder.GlobPlot;
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20 @WebService(endpointInterface = "compbio.data.msa.SequenceAnnotation", targetNamespace = JABAService.V2_SERVICE_NAMESPACE, serviceName = "GlobPlotWS")
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21 public class GlobPlotWS extends SequenceAnnotationService<GlobPlot>
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23 SequenceAnnotation<GlobPlot> {
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25 private static Logger log = Logger.getLogger(GlobPlotWS.class);
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27 public GlobPlotWS() {
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28 super(new GlobPlot(), log);
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32 * No options are supported, thus the result of this call will be as simple
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33 * call to analize without parameters
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36 public String customAnalize(List<FastaSequence> sequences,
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37 List<Option<GlobPlot>> options) throws UnsupportedRuntimeException,
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38 LimitExceededException, JobSubmissionException,
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39 WrongParameterException {
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40 return analize(sequences);
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44 * No presets are supported, thus the result of this call will be as simple
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45 * call to analize without parameters
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48 public String presetAnalize(List<FastaSequence> sequences,
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49 Preset<GlobPlot> preset) throws UnsupportedRuntimeException,
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50 LimitExceededException, JobSubmissionException,
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51 WrongParameterException {
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53 return analize(sequences);
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