1 /* Copyright (c) 2011 Peter Troshin
\r
3 * JAva Bioinformatics Analysis Web Services (JABAWS) @version: 2.0
\r
5 * This library is free software; you can redistribute it and/or modify it under the terms of the
\r
6 * Apache License version 2 as published by the Apache Software Foundation
\r
8 * This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without
\r
9 * even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Apache
\r
10 * License for more details.
\r
12 * A copy of the license is in apache_license.txt. It is also available here:
\r
13 * @see: http://www.apache.org/licenses/LICENSE-2.0.txt
\r
15 * Any republication or derived work distributed in source code form
\r
16 * must include this copyright and license notice.
\r
18 package compbio.ws.server;
\r
20 import java.io.File;
\r
22 import javax.jws.WebService;
\r
24 import org.apache.log4j.Logger;
\r
26 import compbio.data.msa.JABAService;
\r
27 import compbio.data.msa.SequenceAnnotation;
\r
28 import compbio.engine.Configurator;
\r
29 import compbio.metadata.ChunkHolder;
\r
30 import compbio.runner.conservation.AACon;
\r
31 import compbio.runner.disorder.Jronn;
\r
33 @WebService(endpointInterface = "compbio.data.msa.SequenceAnnotation", targetNamespace = JABAService.V2_SERVICE_NAMESPACE, serviceName = "JronnWS")
\r
34 public class JronnWS extends SequenceAnnotationService<Jronn>
\r
36 SequenceAnnotation<Jronn> {
\r
38 private static Logger log = Logger.getLogger(JronnWS.class);
\r
41 super(new Jronn(), log);
\r
45 public ChunkHolder pullExecStatistics(String jobId, long position) {
\r
46 WSUtil.validateJobId(jobId);
\r
47 String file = Configurator.getWorkDirectory(jobId) + File.separator
\r
48 + AACon.getStatFile();
\r
49 return WSUtil.pullFile(file, position);
\r