webservices/compbio/ws/server/resource/JpredWS_schema1.xsd

   1 <?xml version="1.0" encoding="UTF-8" standalone="yes"?>
   2 <xs:schema version="1.0" targetNamespace="http://msa.data.compbio/01/01/2010/" xmlns:tns="http://msa.data.compbio/01/01/2010/" xmlns:xs="http://www.w3.org/2001/XMLSchema">
   3
   4   <xs:element name="JobSubmissionException" type="tns:JobSubmissionException"/>
   5
   6   <xs:element name="LimitExceededException" type="tns:LimitExceededException"/>
   7
   8   <xs:element name="ResultNotAvailableException" type="tns:ResultNotAvailableException"/>
   9
  10   <xs:element name="UnsupportedRuntimeException" type="tns:UnsupportedRuntimeException"/>
  11
  12   <xs:element name="WrongParameterException" type="tns:WrongParameterException"/>
  13
  14   <xs:element name="align" type="tns:align"/>
  15
  16   <xs:element name="alignResponse" type="tns:alignResponse"/>
  17
  18   <xs:element name="cancelJob" type="tns:cancelJob"/>
  19
  20   <xs:element name="cancelJobResponse" type="tns:cancelJobResponse"/>
  21
  22   <xs:element name="customAlign" type="tns:customAlign"/>
  23
  24   <xs:element name="customAlignResponse" type="tns:customAlignResponse"/>
  25
  26   <xs:element name="getJobStatus" type="tns:getJobStatus"/>
  27
  28   <xs:element name="getJobStatusResponse" type="tns:getJobStatusResponse"/>
  29
  30   <xs:element name="getLimit" type="tns:getLimit"/>
  31
  32   <xs:element name="getLimitResponse" type="tns:getLimitResponse"/>
  33
  34   <xs:element name="getLimits" type="tns:getLimits"/>
  35
  36   <xs:element name="getLimitsResponse" type="tns:getLimitsResponse"/>
  37
  38   <xs:element name="getPresets" type="tns:getPresets"/>
  39
  40   <xs:element name="getPresetsResponse" type="tns:getPresetsResponse"/>
  41
  42   <xs:element name="getResult" type="tns:getResult"/>
  43
  44   <xs:element name="getResultResponse" type="tns:getResultResponse"/>
  45
  46   <xs:element name="getRunnerOptions" type="tns:getRunnerOptions"/>
  47
  48   <xs:element name="getRunnerOptionsResponse" type="tns:getRunnerOptionsResponse"/>
  49
  50   <xs:element name="limits" type="tns:limitsManager"/>
  51
  52   <xs:element name="presetAlign" type="tns:presetAlign"/>
  53
  54   <xs:element name="presetAlignResponse" type="tns:presetAlignResponse"/>
  55
  56   <xs:element name="presets" type="tns:presetManager"/>
  57
  58   <xs:element name="pullExecStatistics" type="tns:pullExecStatistics"/>
  59
  60   <xs:element name="pullExecStatisticsResponse" type="tns:pullExecStatisticsResponse"/>
  61
  62   <xs:element name="runnerConfig" type="tns:runnerConfig"/>
  63
  64   <xs:complexType name="align">
  65     <xs:sequence>
  66       <xs:element name="fastaSequences" type="tns:fastaSequence" minOccurs="0" maxOccurs="unbounded"/>
  67     </xs:sequence>
  68   </xs:complexType>
  69
  70   <xs:complexType name="fastaSequence">
  71     <xs:sequence>
  72       <xs:element name="id" type="xs:string" minOccurs="0"/>
  73       <xs:element name="sequence" type="xs:string" minOccurs="0"/>
  74     </xs:sequence>
  75   </xs:complexType>
  76
  77   <xs:complexType name="alignResponse">
  78     <xs:sequence>
  79       <xs:element name="return" type="xs:string" minOccurs="0"/>
  80     </xs:sequence>
  81   </xs:complexType>
  82
  83   <xs:complexType name="UnsupportedRuntimeException">
  84     <xs:sequence>
  85       <xs:element name="message" type="xs:string" minOccurs="0"/>
  86     </xs:sequence>
  87   </xs:complexType>
  88
  89   <xs:complexType name="LimitExceededException">
  90     <xs:sequence>
  91       <xs:element name="actualNumberofSequences" type="xs:int"/>
  92       <xs:element name="message" type="xs:string" minOccurs="0"/>
  93       <xs:element name="numberOfSequencesAllowed" type="xs:int"/>
  94       <xs:element name="sequenceLenghtActual" type="xs:int"/>
  95       <xs:element name="sequenceLenghtAllowed" type="xs:int"/>
  96     </xs:sequence>
  97   </xs:complexType>
  98
  99   <xs:complexType name="JobSubmissionException">
 100     <xs:sequence>
 101       <xs:element name="message" type="xs:string" minOccurs="0"/>
 102     </xs:sequence>
 103   </xs:complexType>
 104
 105   <xs:complexType name="customAlign">
 106     <xs:sequence>
 107       <xs:element name="fastaSequences" type="tns:fastaSequence" minOccurs="0" maxOccurs="unbounded"/>
 108       <xs:element name="options" type="tns:option" minOccurs="0" maxOccurs="unbounded"/>
 109     </xs:sequence>
 110   </xs:complexType>
 111
 112   <xs:complexType name="option">
 113     <xs:sequence>
 114       <xs:element name="description" type="xs:string"/>
 115       <xs:element name="optionNames" type="xs:string" maxOccurs="unbounded"/>
 116       <xs:element name="name" type="xs:string"/>
 117       <xs:element name="furtherDetails" type="xs:anyURI" minOccurs="0"/>
 118       <xs:element name="defaultValue" type="xs:string" minOccurs="0"/>
 119     </xs:sequence>
 120     <xs:attribute name="isRequired" type="xs:boolean" use="required"/>
 121   </xs:complexType>
 122
 123   <xs:complexType name="customAlignResponse">
 124     <xs:sequence>
 125       <xs:element name="return" type="xs:string" minOccurs="0"/>
 126     </xs:sequence>
 127   </xs:complexType>
 128
 129   <xs:complexType name="WrongParameterException">
 130     <xs:sequence>
 131       <xs:element name="message" type="xs:string" minOccurs="0"/>
 132     </xs:sequence>
 133   </xs:complexType>
 134
 135   <xs:complexType name="pullExecStatistics">
 136     <xs:sequence>
 137       <xs:element name="jobId" type="xs:string" minOccurs="0"/>
 138       <xs:element name="position" type="xs:long"/>
 139     </xs:sequence>
 140   </xs:complexType>
 141
 142   <xs:complexType name="pullExecStatisticsResponse">
 143     <xs:sequence>
 144       <xs:element name="return" type="tns:chunkHolder" minOccurs="0"/>
 145     </xs:sequence>
 146   </xs:complexType>
 147
 148   <xs:complexType name="chunkHolder">
 149     <xs:sequence>
 150       <xs:element name="chunk" type="xs:string" minOccurs="0"/>
 151       <xs:element name="position" type="xs:long"/>
 152     </xs:sequence>
 153   </xs:complexType>
 154
 155   <xs:complexType name="presetAlign">
 156     <xs:sequence>
 157       <xs:element name="fastaSequences" type="tns:fastaSequence" minOccurs="0" maxOccurs="unbounded"/>
 158       <xs:element name="preset" type="tns:preset" minOccurs="0"/>
 159     </xs:sequence>
 160   </xs:complexType>
 161
 162   <xs:complexType name="preset">
 163     <xs:sequence>
 164       <xs:element name="name" type="xs:string"/>
 165       <xs:element name="description" type="xs:string" minOccurs="0"/>
 166       <xs:element name="optlist" minOccurs="0">
 167         <xs:complexType>
 168           <xs:sequence>
 169             <xs:element name="option" type="xs:string" maxOccurs="unbounded"/>
 170           </xs:sequence>
 171         </xs:complexType>
 172       </xs:element>
 173     </xs:sequence>
 174   </xs:complexType>
 175
 176   <xs:complexType name="presetAlignResponse">
 177     <xs:sequence>
 178       <xs:element name="return" type="xs:string" minOccurs="0"/>
 179     </xs:sequence>
 180   </xs:complexType>
 181
 182   <xs:complexType name="getLimit">
 183     <xs:sequence>
 184       <xs:element name="presetName" type="xs:string" minOccurs="0"/>
 185     </xs:sequence>
 186   </xs:complexType>
 187
 188   <xs:complexType name="getLimitResponse">
 189     <xs:sequence>
 190       <xs:element name="return" type="tns:limit" minOccurs="0"/>
 191     </xs:sequence>
 192   </xs:complexType>
 193
 194   <xs:complexType name="limit">
 195     <xs:sequence>
 196       <xs:element name="preset" type="xs:string" minOccurs="0"/>
 197       <xs:element name="seqNumber" type="xs:int"/>
 198       <xs:element name="seqLength" type="xs:int"/>
 199     </xs:sequence>
 200     <xs:attribute name="isDefault" type="xs:boolean" use="required"/>
 201   </xs:complexType>
 202
 203   <xs:complexType name="getLimits">
 204     <xs:sequence/>
 205   </xs:complexType>
 206
 207   <xs:complexType name="getLimitsResponse">
 208     <xs:sequence>
 209       <xs:element name="return" type="tns:limitsManager" minOccurs="0"/>
 210     </xs:sequence>
 211   </xs:complexType>
 212
 213   <xs:complexType name="limitsManager">
 214     <xs:sequence>
 215       <xs:element name="runnerClassName" type="xs:string" minOccurs="0"/>
 216       <xs:element name="limit" type="tns:limit" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
 217     </xs:sequence>
 218   </xs:complexType>
 219
 220   <xs:complexType name="getPresets">
 221     <xs:sequence/>
 222   </xs:complexType>
 223
 224   <xs:complexType name="getPresetsResponse">
 225     <xs:sequence>
 226       <xs:element name="return" type="tns:presetManager" minOccurs="0"/>
 227     </xs:sequence>
 228   </xs:complexType>
 229
 230   <xs:complexType name="presetManager">
 231     <xs:sequence>
 232       <xs:element name="runnerClassName" type="xs:string"/>
 233       <xs:element name="preset" type="tns:preset" maxOccurs="unbounded"/>
 234     </xs:sequence>
 235   </xs:complexType>
 236
 237   <xs:complexType name="cancelJob">
 238     <xs:sequence>
 239       <xs:element name="jobId" type="xs:string" minOccurs="0"/>
 240     </xs:sequence>
 241   </xs:complexType>
 242
 243   <xs:complexType name="cancelJobResponse">
 244     <xs:sequence>
 245       <xs:element name="return" type="xs:boolean"/>
 246     </xs:sequence>
 247   </xs:complexType>
 248
 249   <xs:complexType name="getRunnerOptions">
 250     <xs:sequence/>
 251   </xs:complexType>
 252
 253   <xs:complexType name="getRunnerOptionsResponse">
 254     <xs:sequence>
 255       <xs:element name="return" type="tns:runnerConfig" minOccurs="0"/>
 256     </xs:sequence>
 257   </xs:complexType>
 258
 259   <xs:complexType name="runnerConfig">
 260     <xs:sequence>
 261       <xs:element name="options" type="tns:option" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
 262       <xs:element name="parameters" type="tns:parameter" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
 263       <xs:element name="prmSeparator" type="xs:string" minOccurs="0"/>
 264       <xs:element name="runnerClassName" type="xs:string"/>
 265     </xs:sequence>
 266   </xs:complexType>
 267
 268   <xs:complexType name="parameter">
 269     <xs:complexContent>
 270       <xs:extension base="tns:option">
 271         <xs:sequence>
 272           <xs:element name="possibleValues" type="xs:string" minOccurs="0" maxOccurs="unbounded"/>
 273           <xs:element name="validValue" type="tns:valueConstrain" minOccurs="0"/>
 274         </xs:sequence>
 275       </xs:extension>
 276     </xs:complexContent>
 277   </xs:complexType>
 278
 279   <xs:complexType name="valueConstrain">
 280     <xs:sequence>
 281       <xs:element name="type" type="tns:type"/>
 282       <xs:element name="max" type="xs:string" minOccurs="0"/>
 283       <xs:element name="min" type="xs:string" minOccurs="0"/>
 284     </xs:sequence>
 285   </xs:complexType>
 286
 287   <xs:complexType name="getResult">
 288     <xs:sequence>
 289       <xs:element name="jobId" type="xs:string" minOccurs="0"/>
 290     </xs:sequence>
 291   </xs:complexType>
 292
 293   <xs:complexType name="getResultResponse">
 294     <xs:sequence>
 295       <xs:element name="return" type="tns:alignment" minOccurs="0"/>
 296     </xs:sequence>
 297   </xs:complexType>
 298
 299   <xs:complexType name="alignment">
 300     <xs:sequence>
 301       <xs:element name="metadata" type="tns:alignmentMetadata" minOccurs="0"/>
 302       <xs:element name="sequences" type="tns:fastaSequence" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
 303     </xs:sequence>
 304   </xs:complexType>
 305
 306   <xs:complexType name="alignmentMetadata">
 307     <xs:sequence>
 308       <xs:element name="program" type="tns:program" minOccurs="0"/>
 309       <xs:element name="gapchar" type="xs:unsignedShort"/>
 310     </xs:sequence>
 311   </xs:complexType>
 312
 313   <xs:complexType name="ResultNotAvailableException">
 314     <xs:sequence>
 315       <xs:element name="message" type="xs:string" minOccurs="0"/>
 316     </xs:sequence>
 317   </xs:complexType>
 318
 319   <xs:complexType name="getJobStatus">
 320     <xs:sequence>
 321       <xs:element name="jobId" type="xs:string" minOccurs="0"/>
 322     </xs:sequence>
 323   </xs:complexType>
 324
 325   <xs:complexType name="getJobStatusResponse">
 326     <xs:sequence>
 327       <xs:element name="return" type="tns:jobStatus" minOccurs="0"/>
 328     </xs:sequence>
 329   </xs:complexType>
 330
 331   <xs:simpleType name="type">
 332     <xs:restriction base="xs:string">
 333       <xs:enumeration value="Integer"/>
 334       <xs:enumeration value="Float"/>
 335     </xs:restriction>
 336   </xs:simpleType>
 337
 338   <xs:simpleType name="program">
 339     <xs:restriction base="xs:string">
 340       <xs:enumeration value="CLUSTAL"/>
 341       <xs:enumeration value="MAFFT"/>
 342       <xs:enumeration value="MUSCLE"/>
 343       <xs:enumeration value="Tcoffee"/>
 344       <xs:enumeration value="Probcons"/>
 345       <xs:enumeration value="Jpred"/>
 346     </xs:restriction>
 347   </xs:simpleType>
 348
 349   <xs:simpleType name="jobStatus">
 350     <xs:restriction base="xs:string">
 351       <xs:enumeration value="PENDING"/>
 352       <xs:enumeration value="RUNNING"/>
 353       <xs:enumeration value="CANCELLED"/>
 354       <xs:enumeration value="FINISHED"/>
 355       <xs:enumeration value="FAILED"/>
 356       <xs:enumeration value="UNDEFINED"/>
 357       <xs:enumeration value="STARTED"/>
 358       <xs:enumeration value="SUBMITTED"/>
 359       <xs:enumeration value="COLLECTED"/>
 360     </xs:restriction>
 361   </xs:simpleType>
 362 </xs:schema>
 363