webservices/compbio/ws/server/resource/JpredWS_schema1.xsd

   1 <?xml version="1.0" encoding="UTF-8" standalone="yes"?>
   2 <xs:schema version="1.0" targetNamespace="http://msa.data.compbio/01/12/2010/" xmlns:tns="http://msa.data.compbio/01/12/2010/" xmlns:xs="http://www.w3.org/2001/XMLSchema">
   3
   4   <xs:element name="JobSubmissionException" type="tns:JobSubmissionException"/>
   5
   6   <xs:element name="LimitExceededException" type="tns:LimitExceededException"/>
   7
   8   <xs:element name="ResultNotAvailableException" type="tns:ResultNotAvailableException"/>
   9
  10   <xs:element name="UnsupportedRuntimeException" type="tns:UnsupportedRuntimeException"/>
  11
  12   <xs:element name="WrongParameterException" type="tns:WrongParameterException"/>
  13
  14   <xs:element name="analize" type="tns:analize"/>
  15
  16   <xs:element name="analizeResponse" type="tns:analizeResponse"/>
  17
  18   <xs:element name="cancelJob" type="tns:cancelJob"/>
  19
  20   <xs:element name="cancelJobResponse" type="tns:cancelJobResponse"/>
  21
  22   <xs:element name="customAnalize" type="tns:customAnalize"/>
  23
  24   <xs:element name="customAnalizeResponse" type="tns:customAnalizeResponse"/>
  25
  26   <xs:element name="getAnnotation" type="tns:getAnnotation"/>
  27
  28   <xs:element name="getAnnotationResponse" type="tns:getAnnotationResponse"/>
  29
  30   <xs:element name="getJobStatus" type="tns:getJobStatus"/>
  31
  32   <xs:element name="getJobStatusResponse" type="tns:getJobStatusResponse"/>
  33
  34   <xs:element name="getLimit" type="tns:getLimit"/>
  35
  36   <xs:element name="getLimitResponse" type="tns:getLimitResponse"/>
  37
  38   <xs:element name="getLimits" type="tns:getLimits"/>
  39
  40   <xs:element name="getLimitsResponse" type="tns:getLimitsResponse"/>
  41
  42   <xs:element name="getPresets" type="tns:getPresets"/>
  43
  44   <xs:element name="getPresetsResponse" type="tns:getPresetsResponse"/>
  45
  46   <xs:element name="getRunnerOptions" type="tns:getRunnerOptions"/>
  47
  48   <xs:element name="getRunnerOptionsResponse" type="tns:getRunnerOptionsResponse"/>
  49
  50   <xs:element name="limits" type="tns:limitsManager"/>
  51
  52   <xs:element name="presetAnalize" type="tns:presetAnalize"/>
  53
  54   <xs:element name="presetAnalizeResponse" type="tns:presetAnalizeResponse"/>
  55
  56   <xs:element name="presets" type="tns:presetManager"/>
  57
  58   <xs:element name="pullExecStatistics" type="tns:pullExecStatistics"/>
  59
  60   <xs:element name="pullExecStatisticsResponse" type="tns:pullExecStatisticsResponse"/>
  61
  62   <xs:element name="runnerConfig" type="tns:runnerConfig"/>
  63
  64   <xs:complexType name="customAnalize">
  65     <xs:sequence>
  66       <xs:element name="fastaSequences" type="tns:fastaSequence" minOccurs="0" maxOccurs="unbounded"/>
  67       <xs:element name="options" type="tns:option" minOccurs="0" maxOccurs="unbounded"/>
  68     </xs:sequence>
  69   </xs:complexType>
  70
  71   <xs:complexType name="fastaSequence">
  72     <xs:sequence>
  73       <xs:element name="id" type="xs:string" minOccurs="0"/>
  74       <xs:element name="sequence" type="xs:string" minOccurs="0"/>
  75     </xs:sequence>
  76   </xs:complexType>
  77
  78   <xs:complexType name="option">
  79     <xs:sequence>
  80       <xs:element name="description" type="xs:string"/>
  81       <xs:element name="optionNames" type="xs:string" maxOccurs="unbounded"/>
  82       <xs:element name="name" type="xs:string"/>
  83       <xs:element name="furtherDetails" type="xs:anyURI" minOccurs="0"/>
  84       <xs:element name="defaultValue" type="xs:string" minOccurs="0"/>
  85     </xs:sequence>
  86     <xs:attribute name="isRequired" type="xs:boolean" use="required"/>
  87   </xs:complexType>
  88
  89   <xs:complexType name="customAnalizeResponse">
  90     <xs:sequence>
  91       <xs:element name="return" type="xs:string" minOccurs="0"/>
  92     </xs:sequence>
  93   </xs:complexType>
  94
  95   <xs:complexType name="UnsupportedRuntimeException">
  96     <xs:sequence>
  97       <xs:element name="message" type="xs:string" minOccurs="0"/>
  98     </xs:sequence>
  99   </xs:complexType>
 100
 101   <xs:complexType name="LimitExceededException">
 102     <xs:sequence>
 103       <xs:element name="actualNumberofSequences" type="xs:int"/>
 104       <xs:element name="message" type="xs:string" minOccurs="0"/>
 105       <xs:element name="numberOfSequencesAllowed" type="xs:int"/>
 106       <xs:element name="sequenceLenghtActual" type="xs:int"/>
 107       <xs:element name="sequenceLenghtAllowed" type="xs:int"/>
 108     </xs:sequence>
 109   </xs:complexType>
 110
 111   <xs:complexType name="JobSubmissionException">
 112     <xs:sequence>
 113       <xs:element name="message" type="xs:string" minOccurs="0"/>
 114     </xs:sequence>
 115   </xs:complexType>
 116
 117   <xs:complexType name="WrongParameterException">
 118     <xs:sequence>
 119       <xs:element name="message" type="xs:string" minOccurs="0"/>
 120     </xs:sequence>
 121   </xs:complexType>
 122
 123   <xs:complexType name="getRunnerOptions">
 124     <xs:sequence/>
 125   </xs:complexType>
 126
 127   <xs:complexType name="getRunnerOptionsResponse">
 128     <xs:sequence>
 129       <xs:element name="return" type="tns:runnerConfig" minOccurs="0"/>
 130     </xs:sequence>
 131   </xs:complexType>
 132
 133   <xs:complexType name="runnerConfig">
 134     <xs:sequence>
 135       <xs:element name="options" type="tns:option" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
 136       <xs:element name="parameters" type="tns:parameter" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
 137       <xs:element name="prmSeparator" type="xs:string" minOccurs="0"/>
 138       <xs:element name="runnerClassName" type="xs:string"/>
 139     </xs:sequence>
 140   </xs:complexType>
 141
 142   <xs:complexType name="parameter">
 143     <xs:complexContent>
 144       <xs:extension base="tns:option">
 145         <xs:sequence>
 146           <xs:element name="possibleValues" type="xs:string" minOccurs="0" maxOccurs="unbounded"/>
 147           <xs:element name="validValue" type="tns:valueConstrain" minOccurs="0"/>
 148         </xs:sequence>
 149       </xs:extension>
 150     </xs:complexContent>
 151   </xs:complexType>
 152
 153   <xs:complexType name="valueConstrain">
 154     <xs:sequence>
 155       <xs:element name="type" type="tns:type"/>
 156       <xs:element name="max" type="xs:string" minOccurs="0"/>
 157       <xs:element name="min" type="xs:string" minOccurs="0"/>
 158     </xs:sequence>
 159   </xs:complexType>
 160
 161   <xs:complexType name="pullExecStatistics">
 162     <xs:sequence>
 163       <xs:element name="jobId" type="xs:string" minOccurs="0"/>
 164       <xs:element name="position" type="xs:long"/>
 165     </xs:sequence>
 166   </xs:complexType>
 167
 168   <xs:complexType name="pullExecStatisticsResponse">
 169     <xs:sequence>
 170       <xs:element name="return" type="tns:chunkHolder" minOccurs="0"/>
 171     </xs:sequence>
 172   </xs:complexType>
 173
 174   <xs:complexType name="chunkHolder">
 175     <xs:sequence>
 176       <xs:element name="chunk" type="xs:string" minOccurs="0"/>
 177       <xs:element name="position" type="xs:long"/>
 178     </xs:sequence>
 179   </xs:complexType>
 180
 181   <xs:complexType name="getJobStatus">
 182     <xs:sequence>
 183       <xs:element name="jobId" type="xs:string" minOccurs="0"/>
 184     </xs:sequence>
 185   </xs:complexType>
 186
 187   <xs:complexType name="getJobStatusResponse">
 188     <xs:sequence>
 189       <xs:element name="return" type="tns:jobStatus" minOccurs="0"/>
 190     </xs:sequence>
 191   </xs:complexType>
 192
 193   <xs:complexType name="presetAnalize">
 194     <xs:sequence>
 195       <xs:element name="fastaSequences" type="tns:fastaSequence" minOccurs="0" maxOccurs="unbounded"/>
 196       <xs:element name="preset" type="tns:preset" minOccurs="0"/>
 197     </xs:sequence>
 198   </xs:complexType>
 199
 200   <xs:complexType name="preset">
 201     <xs:sequence>
 202       <xs:element name="name" type="xs:string"/>
 203       <xs:element name="description" type="xs:string" minOccurs="0"/>
 204       <xs:element name="optlist" minOccurs="0">
 205         <xs:complexType>
 206           <xs:sequence>
 207             <xs:element name="option" type="xs:string" maxOccurs="unbounded"/>
 208           </xs:sequence>
 209         </xs:complexType>
 210       </xs:element>
 211     </xs:sequence>
 212   </xs:complexType>
 213
 214   <xs:complexType name="presetAnalizeResponse">
 215     <xs:sequence>
 216       <xs:element name="return" type="xs:string" minOccurs="0"/>
 217     </xs:sequence>
 218   </xs:complexType>
 219
 220   <xs:complexType name="getAnnotation">
 221     <xs:sequence>
 222       <xs:element name="jobId" type="xs:string" minOccurs="0"/>
 223     </xs:sequence>
 224   </xs:complexType>
 225
 226   <xs:complexType name="getAnnotationResponse">
 227     <xs:sequence>
 228       <xs:element name="return" type="tns:scoreManager" minOccurs="0"/>
 229     </xs:sequence>
 230   </xs:complexType>
 231
 232   <xs:complexType name="scoreManager">
 233     <xs:sequence>
 234       <xs:element name="seqScores" type="tns:scoreHolder" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
 235     </xs:sequence>
 236   </xs:complexType>
 237
 238   <xs:complexType name="scoreHolder">
 239     <xs:sequence>
 240       <xs:element name="id" type="xs:string" minOccurs="0"/>
 241       <xs:element name="scores" type="tns:score" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
 242     </xs:sequence>
 243   </xs:complexType>
 244
 245   <xs:complexType name="score">
 246     <xs:sequence>
 247       <xs:element name="method" type="xs:string" minOccurs="0"/>
 248       <xs:element name="ranges" type="tns:range" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
 249       <xs:element name="scores" type="xs:float" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
 250     </xs:sequence>
 251   </xs:complexType>
 252
 253   <xs:complexType name="range">
 254     <xs:sequence>
 255       <xs:element name="from" type="xs:int"/>
 256       <xs:element name="to" type="xs:int"/>
 257     </xs:sequence>
 258   </xs:complexType>
 259
 260   <xs:complexType name="ResultNotAvailableException">
 261     <xs:sequence>
 262       <xs:element name="message" type="xs:string" minOccurs="0"/>
 263     </xs:sequence>
 264   </xs:complexType>
 265
 266   <xs:complexType name="getLimits">
 267     <xs:sequence/>
 268   </xs:complexType>
 269
 270   <xs:complexType name="getLimitsResponse">
 271     <xs:sequence>
 272       <xs:element name="return" type="tns:limitsManager" minOccurs="0"/>
 273     </xs:sequence>
 274   </xs:complexType>
 275
 276   <xs:complexType name="limitsManager">
 277     <xs:sequence>
 278       <xs:element name="runnerClassName" type="xs:string" minOccurs="0"/>
 279       <xs:element name="limit" type="tns:limit" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
 280     </xs:sequence>
 281   </xs:complexType>
 282
 283   <xs:complexType name="limit">
 284     <xs:sequence>
 285       <xs:element name="preset" type="xs:string" minOccurs="0"/>
 286       <xs:element name="seqNumber" type="xs:int"/>
 287       <xs:element name="seqLength" type="xs:int"/>
 288     </xs:sequence>
 289     <xs:attribute name="isDefault" type="xs:boolean" use="required"/>
 290   </xs:complexType>
 291
 292   <xs:complexType name="getPresets">
 293     <xs:sequence/>
 294   </xs:complexType>
 295
 296   <xs:complexType name="getPresetsResponse">
 297     <xs:sequence>
 298       <xs:element name="return" type="tns:presetManager" minOccurs="0"/>
 299     </xs:sequence>
 300   </xs:complexType>
 301
 302   <xs:complexType name="presetManager">
 303     <xs:sequence>
 304       <xs:element name="runnerClassName" type="xs:string"/>
 305       <xs:element name="preset" type="tns:preset" maxOccurs="unbounded"/>
 306     </xs:sequence>
 307   </xs:complexType>
 308
 309   <xs:complexType name="getLimit">
 310     <xs:sequence>
 311       <xs:element name="presetName" type="xs:string" minOccurs="0"/>
 312     </xs:sequence>
 313   </xs:complexType>
 314
 315   <xs:complexType name="getLimitResponse">
 316     <xs:sequence>
 317       <xs:element name="return" type="tns:limit" minOccurs="0"/>
 318     </xs:sequence>
 319   </xs:complexType>
 320
 321   <xs:complexType name="cancelJob">
 322     <xs:sequence>
 323       <xs:element name="jobId" type="xs:string" minOccurs="0"/>
 324     </xs:sequence>
 325   </xs:complexType>
 326
 327   <xs:complexType name="cancelJobResponse">
 328     <xs:sequence>
 329       <xs:element name="return" type="xs:boolean"/>
 330     </xs:sequence>
 331   </xs:complexType>
 332
 333   <xs:complexType name="analize">
 334     <xs:sequence>
 335       <xs:element name="fastaSequences" type="tns:fastaSequence" minOccurs="0" maxOccurs="unbounded"/>
 336     </xs:sequence>
 337   </xs:complexType>
 338
 339   <xs:complexType name="analizeResponse">
 340     <xs:sequence>
 341       <xs:element name="return" type="xs:string" minOccurs="0"/>
 342     </xs:sequence>
 343   </xs:complexType>
 344
 345   <xs:simpleType name="type">
 346     <xs:restriction base="xs:string">
 347       <xs:enumeration value="Integer"/>
 348       <xs:enumeration value="Float"/>
 349     </xs:restriction>
 350   </xs:simpleType>
 351
 352   <xs:simpleType name="jobStatus">
 353     <xs:restriction base="xs:string">
 354       <xs:enumeration value="PENDING"/>
 355       <xs:enumeration value="RUNNING"/>
 356       <xs:enumeration value="CANCELLED"/>
 357       <xs:enumeration value="FINISHED"/>
 358       <xs:enumeration value="FAILED"/>
 359       <xs:enumeration value="UNDEFINED"/>
 360       <xs:enumeration value="STARTED"/>
 361       <xs:enumeration value="SUBMITTED"/>
 362       <xs:enumeration value="COLLECTED"/>
 363     </xs:restriction>
 364   </xs:simpleType>
 365 </xs:schema>
 366