webservices/compbio/ws/server/resource/MSAprobsWS_schema1.xsd

   1 <?xml version="1.0" encoding="UTF-8" standalone="yes"?>
   2 <xs:schema version="1.0" targetNamespace="http://msa.data.compbio/01/01/2010/" xmlns:tns="http://msa.data.compbio/01/01/2010/" xmlns:xs="http://www.w3.org/2001/XMLSchema">
   3
   4   <xs:element name="JobSubmissionException" type="tns:JobSubmissionException"/>
   5
   6   <xs:element name="LimitExceededException" type="tns:LimitExceededException"/>
   7
   8   <xs:element name="ResultNotAvailableException" type="tns:ResultNotAvailableException"/>
   9
  10   <xs:element name="UnsupportedRuntimeException" type="tns:UnsupportedRuntimeException"/>
  11
  12   <xs:element name="WrongParameterException" type="tns:WrongParameterException"/>
  13
  14   <xs:element name="align" type="tns:align"/>
  15
  16   <xs:element name="alignResponse" type="tns:alignResponse"/>
  17
  18   <xs:element name="cancelJob" type="tns:cancelJob"/>
  19
  20   <xs:element name="cancelJobResponse" type="tns:cancelJobResponse"/>
  21
  22   <xs:element name="customAlign" type="tns:customAlign"/>
  23
  24   <xs:element name="customAlignResponse" type="tns:customAlignResponse"/>
  25
  26   <xs:element name="getJobStatus" type="tns:getJobStatus"/>
  27
  28   <xs:element name="getJobStatusResponse" type="tns:getJobStatusResponse"/>
  29
  30   <xs:element name="getLimit" type="tns:getLimit"/>
  31
  32   <xs:element name="getLimitResponse" type="tns:getLimitResponse"/>
  33
  34   <xs:element name="getLimits" type="tns:getLimits"/>
  35
  36   <xs:element name="getLimitsResponse" type="tns:getLimitsResponse"/>
  37
  38   <xs:element name="getPresets" type="tns:getPresets"/>
  39
  40   <xs:element name="getPresetsResponse" type="tns:getPresetsResponse"/>
  41
  42   <xs:element name="getResult" type="tns:getResult"/>
  43
  44   <xs:element name="getResultResponse" type="tns:getResultResponse"/>
  45
  46   <xs:element name="getRunnerOptions" type="tns:getRunnerOptions"/>
  47
  48   <xs:element name="getRunnerOptionsResponse" type="tns:getRunnerOptionsResponse"/>
  49
  50   <xs:element name="limits" type="tns:limitsManager"/>
  51
  52   <xs:element name="presetAlign" type="tns:presetAlign"/>
  53
  54   <xs:element name="presetAlignResponse" type="tns:presetAlignResponse"/>
  55
  56   <xs:element name="presets" type="tns:presetManager"/>
  57
  58   <xs:element name="pullExecStatistics" type="tns:pullExecStatistics"/>
  59
  60   <xs:element name="pullExecStatisticsResponse" type="tns:pullExecStatisticsResponse"/>
  61
  62   <xs:element name="runnerConfig" type="tns:runnerConfig"/>
  63
  64   <xs:complexType name="getRunnerOptions">
  65     <xs:sequence/>
  66   </xs:complexType>
  67
  68   <xs:complexType name="getRunnerOptionsResponse">
  69     <xs:sequence>
  70       <xs:element name="return" type="tns:runnerConfig" minOccurs="0"/>
  71     </xs:sequence>
  72   </xs:complexType>
  73
  74   <xs:complexType name="runnerConfig">
  75     <xs:sequence>
  76       <xs:element name="options" type="tns:option" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
  77       <xs:element name="parameters" type="tns:parameter" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
  78       <xs:element name="prmSeparator" type="xs:string" minOccurs="0"/>
  79       <xs:element name="runnerClassName" type="xs:string"/>
  80     </xs:sequence>
  81   </xs:complexType>
  82
  83   <xs:complexType name="option">
  84     <xs:sequence>
  85       <xs:element name="description" type="xs:string"/>
  86       <xs:element name="optionNames" type="xs:string" maxOccurs="unbounded"/>
  87       <xs:element name="name" type="xs:string"/>
  88       <xs:element name="furtherDetails" type="xs:string" minOccurs="0"/>
  89       <xs:element name="defaultValue" type="xs:string" minOccurs="0"/>
  90     </xs:sequence>
  91     <xs:attribute name="isRequired" type="xs:boolean" use="required"/>
  92   </xs:complexType>
  93
  94   <xs:complexType name="parameter">
  95     <xs:complexContent>
  96       <xs:extension base="tns:option">
  97         <xs:sequence>
  98           <xs:element name="possibleValues" type="xs:string" minOccurs="0" maxOccurs="unbounded"/>
  99           <xs:element name="validValue" type="tns:valueConstrain" minOccurs="0"/>
 100         </xs:sequence>
 101       </xs:extension>
 102     </xs:complexContent>
 103   </xs:complexType>
 104
 105   <xs:complexType name="valueConstrain">
 106     <xs:sequence>
 107       <xs:element name="type" type="tns:type"/>
 108       <xs:element name="max" type="xs:string" minOccurs="0"/>
 109       <xs:element name="min" type="xs:string" minOccurs="0"/>
 110     </xs:sequence>
 111   </xs:complexType>
 112
 113   <xs:complexType name="getResult">
 114     <xs:sequence>
 115       <xs:element name="jobId" type="xs:string" minOccurs="0"/>
 116     </xs:sequence>
 117   </xs:complexType>
 118
 119   <xs:complexType name="getResultResponse">
 120     <xs:sequence>
 121       <xs:element name="return" type="tns:alignment" minOccurs="0"/>
 122     </xs:sequence>
 123   </xs:complexType>
 124
 125   <xs:complexType name="alignment">
 126     <xs:sequence>
 127       <xs:element name="metadata" type="tns:alignmentMetadata" minOccurs="0"/>
 128       <xs:element name="sequences" type="tns:fastaSequence" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
 129     </xs:sequence>
 130   </xs:complexType>
 131
 132   <xs:complexType name="alignmentMetadata">
 133     <xs:sequence>
 134       <xs:element name="program" type="tns:program" minOccurs="0"/>
 135       <xs:element name="gapchar" type="xs:unsignedShort"/>
 136     </xs:sequence>
 137   </xs:complexType>
 138
 139   <xs:complexType name="fastaSequence">
 140     <xs:sequence>
 141       <xs:element name="id" type="xs:string" minOccurs="0"/>
 142       <xs:element name="sequence" type="xs:string" minOccurs="0"/>
 143     </xs:sequence>
 144   </xs:complexType>
 145
 146   <xs:complexType name="jpredAlignment">
 147     <xs:complexContent>
 148       <xs:extension base="tns:alignment">
 149         <xs:sequence/>
 150       </xs:extension>
 151     </xs:complexContent>
 152   </xs:complexType>
 153
 154   <xs:complexType name="ResultNotAvailableException">
 155     <xs:sequence>
 156       <xs:element name="message" type="xs:string" minOccurs="0"/>
 157     </xs:sequence>
 158   </xs:complexType>
 159
 160   <xs:complexType name="getJobStatus">
 161     <xs:sequence>
 162       <xs:element name="jobId" type="xs:string" minOccurs="0"/>
 163     </xs:sequence>
 164   </xs:complexType>
 165
 166   <xs:complexType name="getJobStatusResponse">
 167     <xs:sequence>
 168       <xs:element name="return" type="tns:jobStatus" minOccurs="0"/>
 169     </xs:sequence>
 170   </xs:complexType>
 171
 172   <xs:complexType name="pullExecStatistics">
 173     <xs:sequence>
 174       <xs:element name="jobId" type="xs:string" minOccurs="0"/>
 175       <xs:element name="position" type="xs:long"/>
 176     </xs:sequence>
 177   </xs:complexType>
 178
 179   <xs:complexType name="pullExecStatisticsResponse">
 180     <xs:sequence>
 181       <xs:element name="return" type="tns:chunkHolder" minOccurs="0"/>
 182     </xs:sequence>
 183   </xs:complexType>
 184
 185   <xs:complexType name="chunkHolder">
 186     <xs:sequence>
 187       <xs:element name="chunk" type="xs:string" minOccurs="0"/>
 188       <xs:element name="position" type="xs:long"/>
 189     </xs:sequence>
 190   </xs:complexType>
 191
 192   <xs:complexType name="customAlign">
 193     <xs:sequence>
 194       <xs:element name="fastaSequences" type="tns:fastaSequence" minOccurs="0" maxOccurs="unbounded"/>
 195       <xs:element name="options" type="tns:option" minOccurs="0" maxOccurs="unbounded"/>
 196     </xs:sequence>
 197   </xs:complexType>
 198
 199   <xs:complexType name="customAlignResponse">
 200     <xs:sequence>
 201       <xs:element name="return" type="xs:string" minOccurs="0"/>
 202     </xs:sequence>
 203   </xs:complexType>
 204
 205   <xs:complexType name="UnsupportedRuntimeException">
 206     <xs:sequence>
 207       <xs:element name="message" type="xs:string" minOccurs="0"/>
 208     </xs:sequence>
 209   </xs:complexType>
 210
 211   <xs:complexType name="LimitExceededException">
 212     <xs:sequence>
 213       <xs:element name="actualNumberofSequences" type="xs:int"/>
 214       <xs:element name="message" type="xs:string" minOccurs="0"/>
 215       <xs:element name="numberOfSequencesAllowed" type="xs:int"/>
 216       <xs:element name="sequenceLenghtActual" type="xs:int"/>
 217       <xs:element name="sequenceLenghtAllowed" type="xs:int"/>
 218     </xs:sequence>
 219   </xs:complexType>
 220
 221   <xs:complexType name="JobSubmissionException">
 222     <xs:sequence>
 223       <xs:element name="message" type="xs:string" minOccurs="0"/>
 224     </xs:sequence>
 225   </xs:complexType>
 226
 227   <xs:complexType name="WrongParameterException">
 228     <xs:sequence>
 229       <xs:element name="message" type="xs:string" minOccurs="0"/>
 230     </xs:sequence>
 231   </xs:complexType>
 232
 233   <xs:complexType name="align">
 234     <xs:sequence>
 235       <xs:element name="fastaSequences" type="tns:fastaSequence" minOccurs="0" maxOccurs="unbounded"/>
 236     </xs:sequence>
 237   </xs:complexType>
 238
 239   <xs:complexType name="alignResponse">
 240     <xs:sequence>
 241       <xs:element name="return" type="xs:string" minOccurs="0"/>
 242     </xs:sequence>
 243   </xs:complexType>
 244
 245   <xs:complexType name="getPresets">
 246     <xs:sequence/>
 247   </xs:complexType>
 248
 249   <xs:complexType name="getPresetsResponse">
 250     <xs:sequence>
 251       <xs:element name="return" type="tns:presetManager" minOccurs="0"/>
 252     </xs:sequence>
 253   </xs:complexType>
 254
 255   <xs:complexType name="presetManager">
 256     <xs:sequence>
 257       <xs:element name="runnerClassName" type="xs:string"/>
 258       <xs:element name="preset" type="tns:preset" maxOccurs="unbounded"/>
 259     </xs:sequence>
 260   </xs:complexType>
 261
 262   <xs:complexType name="preset">
 263     <xs:sequence>
 264       <xs:element name="name" type="xs:string"/>
 265       <xs:element name="description" type="xs:string" minOccurs="0"/>
 266       <xs:element name="optlist" minOccurs="0">
 267         <xs:complexType>
 268           <xs:sequence>
 269             <xs:element name="option" type="xs:string" maxOccurs="unbounded"/>
 270           </xs:sequence>
 271         </xs:complexType>
 272       </xs:element>
 273     </xs:sequence>
 274   </xs:complexType>
 275
 276   <xs:complexType name="getLimits">
 277     <xs:sequence/>
 278   </xs:complexType>
 279
 280   <xs:complexType name="getLimitsResponse">
 281     <xs:sequence>
 282       <xs:element name="return" type="tns:limitsManager" minOccurs="0"/>
 283     </xs:sequence>
 284   </xs:complexType>
 285
 286   <xs:complexType name="limitsManager">
 287     <xs:sequence>
 288       <xs:element name="runnerClassName" type="xs:string" minOccurs="0"/>
 289       <xs:element name="limit" type="tns:limit" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
 290     </xs:sequence>
 291   </xs:complexType>
 292
 293   <xs:complexType name="limit">
 294     <xs:sequence>
 295       <xs:element name="preset" type="xs:string" minOccurs="0"/>
 296       <xs:element name="seqNumber" type="xs:int"/>
 297       <xs:element name="seqLength" type="xs:int"/>
 298     </xs:sequence>
 299     <xs:attribute name="isDefault" type="xs:boolean" use="required"/>
 300   </xs:complexType>
 301
 302   <xs:complexType name="getLimit">
 303     <xs:sequence>
 304       <xs:element name="presetName" type="xs:string" minOccurs="0"/>
 305     </xs:sequence>
 306   </xs:complexType>
 307
 308   <xs:complexType name="getLimitResponse">
 309     <xs:sequence>
 310       <xs:element name="return" type="tns:limit" minOccurs="0"/>
 311     </xs:sequence>
 312   </xs:complexType>
 313
 314   <xs:complexType name="cancelJob">
 315     <xs:sequence>
 316       <xs:element name="jobId" type="xs:string" minOccurs="0"/>
 317     </xs:sequence>
 318   </xs:complexType>
 319
 320   <xs:complexType name="cancelJobResponse">
 321     <xs:sequence>
 322       <xs:element name="return" type="xs:boolean"/>
 323     </xs:sequence>
 324   </xs:complexType>
 325
 326   <xs:complexType name="presetAlign">
 327     <xs:sequence>
 328       <xs:element name="fastaSequences" type="tns:fastaSequence" minOccurs="0" maxOccurs="unbounded"/>
 329       <xs:element name="preset" type="tns:preset" minOccurs="0"/>
 330     </xs:sequence>
 331   </xs:complexType>
 332
 333   <xs:complexType name="presetAlignResponse">
 334     <xs:sequence>
 335       <xs:element name="return" type="xs:string" minOccurs="0"/>
 336     </xs:sequence>
 337   </xs:complexType>
 338
 339   <xs:simpleType name="type">
 340     <xs:restriction base="xs:string">
 341       <xs:enumeration value="Integer"/>
 342       <xs:enumeration value="Float"/>
 343     </xs:restriction>
 344   </xs:simpleType>
 345
 346   <xs:simpleType name="program">
 347     <xs:restriction base="xs:string">
 348       <xs:enumeration value="CLUSTAL"/>
 349       <xs:enumeration value="ClustalO"/>
 350       <xs:enumeration value="Mafft"/>
 351       <xs:enumeration value="Muscle"/>
 352       <xs:enumeration value="Tcoffee"/>
 353       <xs:enumeration value="Probcons"/>
 354       <xs:enumeration value="MSAprobs"/>
 355       <xs:enumeration value="GLprobs"/>
 356       <xs:enumeration value="Jpred"/>
 357     </xs:restriction>
 358   </xs:simpleType>
 359
 360   <xs:simpleType name="jobStatus">
 361     <xs:restriction base="xs:string">
 362       <xs:enumeration value="PENDING"/>
 363       <xs:enumeration value="RUNNING"/>
 364       <xs:enumeration value="CANCELLED"/>
 365       <xs:enumeration value="FINISHED"/>
 366       <xs:enumeration value="FAILED"/>
 367       <xs:enumeration value="UNDEFINED"/>
 368       <xs:enumeration value="STARTED"/>
 369       <xs:enumeration value="SUBMITTED"/>
 370       <xs:enumeration value="COLLECTED"/>
 371     </xs:restriction>
 372   </xs:simpleType>
 373 </xs:schema>
 374