1 # Replaces squids own automake files
3 # Some useful automake documentation:
4 # http://www.openismus.com/documents/linux/automake/automake.shtml
5 # http://www.bioinf.uni-freiburg.de/~mmann/HowTo/automake.html
8 EXTRA_DIST = COPYRIGHT LICENSE 00README clustalo.README squid-1.9g.tar.gz
11 # need DCLUSTALO here to enable Clustal specific squid patches
12 # CLUSTALO is also defined in ../config.h which is included by squid.h
13 # but some files do not include squid.h
14 AM_CFLAGS = -DCLUSTALO -DSRE_STRICT_ANSI @AM_CFLAGS@
16 noinst_LTLIBRARIES = libsquid.la
18 libsquid_la_SOURCES = a2m.c aligneval.c alignio.c \
23 getopt.c gki.c gki.h gsi.c gsi.h gsi64.c gsi64.h \
29 selex.c seqencode.c shuffle.c sqerror.c sqfuncs.h sqio.c squid.h squidcore.c \
30 sre_ctype.c sre_math.c sre_random.c sre_random.h sre_string.c \
31 ssi.c ssi.h stack.c stockholm.c stockholm.h stopwatch.c stopwatch.h \
32 translate.c types.c vectorops.c \
33 vectorops.h version.h \
36 library_includedir=$(includedir)/clustalo/squid
38 library_include_HEADERS = gki.h gsi64.h msa.h rk.h \
39 squid.h stopwatch.h sqfuncs.h \
40 sre_random.h ssi.h stockholm.h \