website/archive/binaries/mac/src/clustalw/src/.deps/main.Po

   1 main.o main.o: main.cpp config.h /usr/include/c++/4.2.1/iostream \
   2   /usr/include/c++/4.2.1/i686-apple-darwin10/bits/c++config.h \
   3   /usr/include/c++/4.2.1/i686-apple-darwin10/bits/os_defines.h \
   4   /usr/include/unistd.h /usr/include/_types.h /usr/include/sys/_types.h \
   5   /usr/include/sys/cdefs.h /usr/include/machine/_types.h \
   6   /usr/include/i386/_types.h /usr/include/sys/unistd.h \
   7   /usr/include/sys/select.h /usr/include/sys/appleapiopts.h \
   8   /usr/include/sys/_structs.h /usr/include/sys/_select.h \
   9   /usr/include/c++/4.2.1/i686-apple-darwin10/bits/cpu_defines.h \
  10   /usr/include/c++/4.2.1/ostream /usr/include/c++/4.2.1/ios \
  11   /usr/include/c++/4.2.1/iosfwd \
  12   /usr/include/c++/4.2.1/i686-apple-darwin10/bits/c++locale.h \
  13   /usr/include/c++/4.2.1/clocale /usr/include/locale.h \
  14   /usr/include/_locale.h /usr/include/c++/4.2.1/cstring \
  15   /usr/include/c++/4.2.1/cstddef \
  16   /usr/lib/gcc/i686-apple-darwin10/4.2.1/include/stddef.h \
  17   /usr/include/string.h /usr/include/c++/4.2.1/cstdio \
  18   /usr/include/stdio.h /usr/include/c++/4.2.1/cstdarg \
  19   /usr/lib/gcc/i686-apple-darwin10/4.2.1/include/stdarg.h \
  20   /usr/include/c++/4.2.1/i686-apple-darwin10/bits/c++io.h \
  21   /usr/include/c++/4.2.1/i686-apple-darwin10/bits/gthr.h \
  22   /usr/include/c++/4.2.1/i686-apple-darwin10/bits/gthr-default.h \
  23   /usr/include/pthread.h /usr/include/pthread_impl.h /usr/include/sched.h \
  24   /usr/include/time.h /usr/include/_structs.h \
  25   /usr/include/c++/4.2.1/cctype /usr/include/ctype.h \
  26   /usr/include/runetype.h /usr/include/c++/4.2.1/bits/stringfwd.h \
  27   /usr/include/c++/4.2.1/bits/postypes.h /usr/include/c++/4.2.1/cwchar \
  28   /usr/include/c++/4.2.1/ctime /usr/include/wchar.h \
  29   /usr/include/_wctype.h \
  30   /usr/lib/gcc/i686-apple-darwin10/4.2.1/include/stdint.h \
  31   /usr/include/c++/4.2.1/bits/functexcept.h \
  32   /usr/include/c++/4.2.1/exception_defines.h \
  33   /usr/include/c++/4.2.1/exception \
  34   /usr/include/c++/4.2.1/bits/char_traits.h \
  35   /usr/include/c++/4.2.1/bits/stl_algobase.h \
  36   /usr/include/c++/4.2.1/climits \
  37   /usr/lib/gcc/i686-apple-darwin10/4.2.1/include/limits.h \
  38   /usr/lib/gcc/i686-apple-darwin10/4.2.1/include/syslimits.h \
  39   /usr/include/limits.h /usr/include/machine/limits.h \
  40   /usr/include/i386/limits.h /usr/include/i386/_limits.h \
  41   /usr/include/sys/syslimits.h /usr/include/c++/4.2.1/cstdlib \
  42   /usr/include/stdlib.h /usr/include/Availability.h \
  43   /usr/include/AvailabilityInternal.h /usr/include/sys/wait.h \
  44   /usr/include/sys/signal.h /usr/include/machine/signal.h \
  45   /usr/include/i386/signal.h /usr/include/i386/_structs.h \
  46   /usr/include/machine/_structs.h /usr/include/mach/i386/_structs.h \
  47   /usr/include/sys/resource.h /usr/include/machine/endian.h \
  48   /usr/include/i386/endian.h /usr/include/sys/_endian.h \
  49   /usr/include/libkern/_OSByteOrder.h \
  50   /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
  51   /usr/include/machine/types.h /usr/include/i386/types.h \
  52   /usr/include/i386/_types.h /usr/include/c++/4.2.1/bits/stl_pair.h \
  53   /usr/include/c++/4.2.1/bits/cpp_type_traits.h \
  54   /usr/include/c++/4.2.1/ext/type_traits.h /usr/include/c++/4.2.1/utility \
  55   /usr/include/c++/4.2.1/bits/stl_relops.h \
  56   /usr/include/c++/4.2.1/bits/stl_iterator_base_types.h \
  57   /usr/include/c++/4.2.1/bits/stl_iterator_base_funcs.h \
  58   /usr/include/c++/4.2.1/bits/concept_check.h \
  59   /usr/include/c++/4.2.1/bits/stl_iterator.h \
  60   /usr/include/c++/4.2.1/debug/debug.h \
  61   /usr/include/c++/4.2.1/bits/localefwd.h \
  62   /usr/include/c++/4.2.1/bits/ios_base.h \
  63   /usr/include/c++/4.2.1/ext/atomicity.h \
  64   /usr/include/c++/4.2.1/i686-apple-darwin10/bits/atomic_word.h \
  65   /usr/include/c++/4.2.1/bits/locale_classes.h \
  66   /usr/include/c++/4.2.1/string /usr/include/c++/4.2.1/memory \
  67   /usr/include/c++/4.2.1/bits/allocator.h \
  68   /usr/include/c++/4.2.1/i686-apple-darwin10/bits/c++allocator.h \
  69   /usr/include/c++/4.2.1/ext/new_allocator.h /usr/include/c++/4.2.1/new \
  70   /usr/include/c++/4.2.1/bits/stl_construct.h \
  71   /usr/include/c++/4.2.1/bits/stl_uninitialized.h \
  72   /usr/include/c++/4.2.1/bits/stl_raw_storage_iter.h \
  73   /usr/include/c++/4.2.1/limits \
  74   /usr/include/c++/4.2.1/bits/ostream_insert.h \
  75   /usr/include/c++/4.2.1/bits/stl_function.h \
  76   /usr/include/c++/4.2.1/bits/basic_string.h \
  77   /usr/include/c++/4.2.1/algorithm /usr/include/c++/4.2.1/bits/stl_algo.h \
  78   /usr/include/c++/4.2.1/bits/stl_heap.h \
  79   /usr/include/c++/4.2.1/bits/stl_tempbuf.h \
  80   /usr/include/c++/4.2.1/bits/basic_string.tcc \
  81   /usr/include/c++/4.2.1/streambuf \
  82   /usr/include/c++/4.2.1/bits/streambuf.tcc \
  83   /usr/include/c++/4.2.1/bits/basic_ios.h \
  84   /usr/include/c++/4.2.1/bits/streambuf_iterator.h \
  85   /usr/include/c++/4.2.1/bits/locale_facets.h \
  86   /usr/include/c++/4.2.1/cwctype /usr/include/wctype.h \
  87   /usr/include/c++/4.2.1/i686-apple-darwin10/bits/ctype_base.h \
  88   /usr/include/c++/4.2.1/i686-apple-darwin10/bits/ctype_inline.h \
  89   /usr/include/c++/4.2.1/bits/codecvt.h \
  90   /usr/include/c++/4.2.1/i686-apple-darwin10/bits/time_members.h \
  91   /usr/include/c++/4.2.1/i686-apple-darwin10/bits/messages_members.h \
  92   /usr/include/c++/4.2.1/bits/basic_ios.tcc \
  93   /usr/include/c++/4.2.1/bits/ostream.tcc /usr/include/c++/4.2.1/locale \
  94   /usr/include/c++/4.2.1/bits/locale_facets.tcc \
  95   /usr/include/c++/4.2.1/typeinfo /usr/include/c++/4.2.1/istream \
  96   /usr/include/c++/4.2.1/bits/istream.tcc alignment/Alignment.h \
  97   /usr/include/c++/4.2.1/vector /usr/include/c++/4.2.1/bits/stl_vector.h \
  98   /usr/include/c++/4.2.1/bits/stl_bvector.h \
  99   /usr/include/c++/4.2.1/bits/vector.tcc /usr/include/c++/4.2.1/iomanip \
 100   /usr/include/c++/4.2.1/functional /usr/include/c++/4.2.1/stdexcept \
 101   alignment/Sequence.h alignment/../general/userparams.h \
 102   alignment/../general/UserParameters.h alignment/../general/utils.h \
 103   alignment/../general/Utility.h /usr/include/errno.h \
 104   /usr/include/sys/errno.h alignment/../general/clustalw.h \
 105   alignment/../general/general.h alignment/../general/Array2D.h \
 106   alignment/../general/SquareMat.h alignment/../general/SymMatrix.h \
 107   /usr/include/c++/4.2.1/cmath /usr/include/math.h \
 108   /usr/include/architecture/i386/math.h \
 109   /usr/include/c++/4.2.1/bits/cmath.tcc alignment/../general/utils.h \
 110   alignment/../substitutionMatrix/globalmatrix.h \
 111   alignment/../substitutionMatrix/SubMatrix.h \
 112   alignment/../substitutionMatrix/../general/clustalw.h \
 113   alignment/../substitutionMatrix/../general/userparams.h \
 114   alignment/../substitutionMatrix/../general/utils.h \
 115   alignment/../substitutionMatrix/../general/Array2D.h \
 116   alignment/../general/VectorOutOfRange.h \
 117   alignment/../general/SequenceNotFoundException.h alignment/Sequence.h \
 118   general/clustalw.h general/UserParameters.h \
 119   substitutionMatrix/SubMatrix.h general/Utility.h fileInput/FileReader.h \
 120   fileInput/../alignment/Alignment.h fileInput/../alignment/Sequence.h \
 121   fileInput/../general/userparams.h fileInput/../general/utils.h \
 122   fileInput/FileParser.h fileInput/InFileStream.h \
 123   /usr/include/c++/4.2.1/fstream \
 124   /usr/include/c++/4.2.1/i686-apple-darwin10/bits/basic_file.h \
 125   /usr/include/c++/4.2.1/bits/fstream.tcc fileInput/ClustalFileParser.h \
 126   fileInput/PearsonFileParser.h fileInput/PIRFileParser.h \
 127   fileInput/GDEFileParser.h fileInput/MSFFileParser.h \
 128   fileInput/RSFFileParser.h fileInput/EMBLFileParser.h \
 129   interface/InteractiveMenu.h interface/../Clustal.h \
 130   interface/../general/clustalw.h interface/../general/utils.h \
 131   interface/../general/userparams.h interface/../fileInput/FileReader.h \
 132   interface/../alignment/Alignment.h \
 133   interface/../alignment/AlignmentOutput.h /usr/include/c++/4.2.1/sstream \
 134   /usr/include/c++/4.2.1/bits/sstream.tcc /usr/include/c++/4.2.1/cassert \
 135   /usr/include/assert.h interface/../alignment/Alignment.h \
 136   interface/../general/clustalw.h interface/../general/userparams.h \
 137   interface/../general/utils.h \
 138   interface/../substitutionMatrix/globalmatrix.h \
 139   interface/CommandLineParser.h interface/../general/debuglogObject.h \
 140   interface/../general/DebugLog.h interface/../general/statsObject.h \
 141   interface/../general/Stats.h general/DebugLog.h \
 142   general/ClustalWResources.h general/Stats.h
 143
 144 config.h:
 145
 146 /usr/include/c++/4.2.1/iostream:
 147
 148 /usr/include/c++/4.2.1/i686-apple-darwin10/bits/c++config.h:
 149
 150 /usr/include/c++/4.2.1/i686-apple-darwin10/bits/os_defines.h:
 151
 152 /usr/include/unistd.h:
 153
 154 /usr/include/_types.h:
 155
 156 /usr/include/sys/_types.h:
 157
 158 /usr/include/sys/cdefs.h:
 159
 160 /usr/include/machine/_types.h:
 161
 162 /usr/include/i386/_types.h:
 163
 164 /usr/include/sys/unistd.h:
 165
 166 /usr/include/sys/select.h:
 167
 168 /usr/include/sys/appleapiopts.h:
 169
 170 /usr/include/sys/_structs.h:
 171
 172 /usr/include/sys/_select.h:
 173
 174 /usr/include/c++/4.2.1/i686-apple-darwin10/bits/cpu_defines.h:
 175
 176 /usr/include/c++/4.2.1/ostream:
 177
 178 /usr/include/c++/4.2.1/ios:
 179
 180 /usr/include/c++/4.2.1/iosfwd:
 181
 182 /usr/include/c++/4.2.1/i686-apple-darwin10/bits/c++locale.h:
 183
 184 /usr/include/c++/4.2.1/clocale:
 185
 186 /usr/include/locale.h:
 187
 188 /usr/include/_locale.h:
 189
 190 /usr/include/c++/4.2.1/cstring:
 191
 192 /usr/include/c++/4.2.1/cstddef:
 193
 194 /usr/lib/gcc/i686-apple-darwin10/4.2.1/include/stddef.h:
 195
 196 /usr/include/string.h:
 197
 198 /usr/include/c++/4.2.1/cstdio:
 199
 200 /usr/include/stdio.h:
 201
 202 /usr/include/c++/4.2.1/cstdarg:
 203
 204 /usr/lib/gcc/i686-apple-darwin10/4.2.1/include/stdarg.h:
 205
 206 /usr/include/c++/4.2.1/i686-apple-darwin10/bits/c++io.h:
 207
 208 /usr/include/c++/4.2.1/i686-apple-darwin10/bits/gthr.h:
 209
 210 /usr/include/c++/4.2.1/i686-apple-darwin10/bits/gthr-default.h:
 211
 212 /usr/include/pthread.h:
 213
 214 /usr/include/pthread_impl.h:
 215
 216 /usr/include/sched.h:
 217
 218 /usr/include/time.h:
 219
 220 /usr/include/_structs.h:
 221
 222 /usr/include/c++/4.2.1/cctype:
 223
 224 /usr/include/ctype.h:
 225
 226 /usr/include/runetype.h:
 227
 228 /usr/include/c++/4.2.1/bits/stringfwd.h:
 229
 230 /usr/include/c++/4.2.1/bits/postypes.h:
 231
 232 /usr/include/c++/4.2.1/cwchar:
 233
 234 /usr/include/c++/4.2.1/ctime:
 235
 236 /usr/include/wchar.h:
 237
 238 /usr/include/_wctype.h:
 239
 240 /usr/lib/gcc/i686-apple-darwin10/4.2.1/include/stdint.h:
 241
 242 /usr/include/c++/4.2.1/bits/functexcept.h:
 243
 244 /usr/include/c++/4.2.1/exception_defines.h:
 245
 246 /usr/include/c++/4.2.1/exception:
 247
 248 /usr/include/c++/4.2.1/bits/char_traits.h:
 249
 250 /usr/include/c++/4.2.1/bits/stl_algobase.h:
 251
 252 /usr/include/c++/4.2.1/climits:
 253
 254 /usr/lib/gcc/i686-apple-darwin10/4.2.1/include/limits.h:
 255
 256 /usr/lib/gcc/i686-apple-darwin10/4.2.1/include/syslimits.h:
 257
 258 /usr/include/limits.h:
 259
 260 /usr/include/machine/limits.h:
 261
 262 /usr/include/i386/limits.h:
 263
 264 /usr/include/i386/_limits.h:
 265
 266 /usr/include/sys/syslimits.h:
 267
 268 /usr/include/c++/4.2.1/cstdlib:
 269
 270 /usr/include/stdlib.h:
 271
 272 /usr/include/Availability.h:
 273
 274 /usr/include/AvailabilityInternal.h:
 275
 276 /usr/include/sys/wait.h:
 277
 278 /usr/include/sys/signal.h:
 279
 280 /usr/include/machine/signal.h:
 281
 282 /usr/include/i386/signal.h:
 283
 284 /usr/include/i386/_structs.h:
 285
 286 /usr/include/machine/_structs.h:
 287
 288 /usr/include/mach/i386/_structs.h:
 289
 290 /usr/include/sys/resource.h:
 291
 292 /usr/include/machine/endian.h:
 293
 294 /usr/include/i386/endian.h:
 295
 296 /usr/include/sys/_endian.h:
 297
 298 /usr/include/libkern/_OSByteOrder.h:
 299
 300 /usr/include/libkern/i386/_OSByteOrder.h:
 301
 302 /usr/include/alloca.h:
 303
 304 /usr/include/machine/types.h:
 305
 306 /usr/include/i386/types.h:
 307
 308 /usr/include/i386/_types.h:
 309
 310 /usr/include/c++/4.2.1/bits/stl_pair.h:
 311
 312 /usr/include/c++/4.2.1/bits/cpp_type_traits.h:
 313
 314 /usr/include/c++/4.2.1/ext/type_traits.h:
 315
 316 /usr/include/c++/4.2.1/utility:
 317
 318 /usr/include/c++/4.2.1/bits/stl_relops.h:
 319
 320 /usr/include/c++/4.2.1/bits/stl_iterator_base_types.h:
 321
 322 /usr/include/c++/4.2.1/bits/stl_iterator_base_funcs.h:
 323
 324 /usr/include/c++/4.2.1/bits/concept_check.h:
 325
 326 /usr/include/c++/4.2.1/bits/stl_iterator.h:
 327
 328 /usr/include/c++/4.2.1/debug/debug.h:
 329
 330 /usr/include/c++/4.2.1/bits/localefwd.h:
 331
 332 /usr/include/c++/4.2.1/bits/ios_base.h:
 333
 334 /usr/include/c++/4.2.1/ext/atomicity.h:
 335
 336 /usr/include/c++/4.2.1/i686-apple-darwin10/bits/atomic_word.h:
 337
 338 /usr/include/c++/4.2.1/bits/locale_classes.h:
 339
 340 /usr/include/c++/4.2.1/string:
 341
 342 /usr/include/c++/4.2.1/memory:
 343
 344 /usr/include/c++/4.2.1/bits/allocator.h:
 345
 346 /usr/include/c++/4.2.1/i686-apple-darwin10/bits/c++allocator.h:
 347
 348 /usr/include/c++/4.2.1/ext/new_allocator.h:
 349
 350 /usr/include/c++/4.2.1/new:
 351
 352 /usr/include/c++/4.2.1/bits/stl_construct.h:
 353
 354 /usr/include/c++/4.2.1/bits/stl_uninitialized.h:
 355
 356 /usr/include/c++/4.2.1/bits/stl_raw_storage_iter.h:
 357
 358 /usr/include/c++/4.2.1/limits:
 359
 360 /usr/include/c++/4.2.1/bits/ostream_insert.h:
 361
 362 /usr/include/c++/4.2.1/bits/stl_function.h:
 363
 364 /usr/include/c++/4.2.1/bits/basic_string.h:
 365
 366 /usr/include/c++/4.2.1/algorithm:
 367
 368 /usr/include/c++/4.2.1/bits/stl_algo.h:
 369
 370 /usr/include/c++/4.2.1/bits/stl_heap.h:
 371
 372 /usr/include/c++/4.2.1/bits/stl_tempbuf.h:
 373
 374 /usr/include/c++/4.2.1/bits/basic_string.tcc:
 375
 376 /usr/include/c++/4.2.1/streambuf:
 377
 378 /usr/include/c++/4.2.1/bits/streambuf.tcc:
 379
 380 /usr/include/c++/4.2.1/bits/basic_ios.h:
 381
 382 /usr/include/c++/4.2.1/bits/streambuf_iterator.h:
 383
 384 /usr/include/c++/4.2.1/bits/locale_facets.h:
 385
 386 /usr/include/c++/4.2.1/cwctype:
 387
 388 /usr/include/wctype.h:
 389
 390 /usr/include/c++/4.2.1/i686-apple-darwin10/bits/ctype_base.h:
 391
 392 /usr/include/c++/4.2.1/i686-apple-darwin10/bits/ctype_inline.h:
 393
 394 /usr/include/c++/4.2.1/bits/codecvt.h:
 395
 396 /usr/include/c++/4.2.1/i686-apple-darwin10/bits/time_members.h:
 397
 398 /usr/include/c++/4.2.1/i686-apple-darwin10/bits/messages_members.h:
 399
 400 /usr/include/c++/4.2.1/bits/basic_ios.tcc:
 401
 402 /usr/include/c++/4.2.1/bits/ostream.tcc:
 403
 404 /usr/include/c++/4.2.1/locale:
 405
 406 /usr/include/c++/4.2.1/bits/locale_facets.tcc:
 407
 408 /usr/include/c++/4.2.1/typeinfo:
 409
 410 /usr/include/c++/4.2.1/istream:
 411
 412 /usr/include/c++/4.2.1/bits/istream.tcc:
 413
 414 alignment/Alignment.h:
 415
 416 /usr/include/c++/4.2.1/vector:
 417
 418 /usr/include/c++/4.2.1/bits/stl_vector.h:
 419
 420 /usr/include/c++/4.2.1/bits/stl_bvector.h:
 421
 422 /usr/include/c++/4.2.1/bits/vector.tcc:
 423
 424 /usr/include/c++/4.2.1/iomanip:
 425
 426 /usr/include/c++/4.2.1/functional:
 427
 428 /usr/include/c++/4.2.1/stdexcept:
 429
 430 alignment/Sequence.h:
 431
 432 alignment/../general/userparams.h:
 433
 434 alignment/../general/UserParameters.h:
 435
 436 alignment/../general/utils.h:
 437
 438 alignment/../general/Utility.h:
 439
 440 /usr/include/errno.h:
 441
 442 /usr/include/sys/errno.h:
 443
 444 alignment/../general/clustalw.h:
 445
 446 alignment/../general/general.h:
 447
 448 alignment/../general/Array2D.h:
 449
 450 alignment/../general/SquareMat.h:
 451
 452 alignment/../general/SymMatrix.h:
 453
 454 /usr/include/c++/4.2.1/cmath:
 455
 456 /usr/include/math.h:
 457
 458 /usr/include/architecture/i386/math.h:
 459
 460 /usr/include/c++/4.2.1/bits/cmath.tcc:
 461
 462 alignment/../general/utils.h:
 463
 464 alignment/../substitutionMatrix/globalmatrix.h:
 465
 466 alignment/../substitutionMatrix/SubMatrix.h:
 467
 468 alignment/../substitutionMatrix/../general/clustalw.h:
 469
 470 alignment/../substitutionMatrix/../general/userparams.h:
 471
 472 alignment/../substitutionMatrix/../general/utils.h:
 473
 474 alignment/../substitutionMatrix/../general/Array2D.h:
 475
 476 alignment/../general/VectorOutOfRange.h:
 477
 478 alignment/../general/SequenceNotFoundException.h:
 479
 480 alignment/Sequence.h:
 481
 482 general/clustalw.h:
 483
 484 general/UserParameters.h:
 485
 486 substitutionMatrix/SubMatrix.h:
 487
 488 general/Utility.h:
 489
 490 fileInput/FileReader.h:
 491
 492 fileInput/../alignment/Alignment.h:
 493
 494 fileInput/../alignment/Sequence.h:
 495
 496 fileInput/../general/userparams.h:
 497
 498 fileInput/../general/utils.h:
 499
 500 fileInput/FileParser.h:
 501
 502 fileInput/InFileStream.h:
 503
 504 /usr/include/c++/4.2.1/fstream:
 505
 506 /usr/include/c++/4.2.1/i686-apple-darwin10/bits/basic_file.h:
 507
 508 /usr/include/c++/4.2.1/bits/fstream.tcc:
 509
 510 fileInput/ClustalFileParser.h:
 511
 512 fileInput/PearsonFileParser.h:
 513
 514 fileInput/PIRFileParser.h:
 515
 516 fileInput/GDEFileParser.h:
 517
 518 fileInput/MSFFileParser.h:
 519
 520 fileInput/RSFFileParser.h:
 521
 522 fileInput/EMBLFileParser.h:
 523
 524 interface/InteractiveMenu.h:
 525
 526 interface/../Clustal.h:
 527
 528 interface/../general/clustalw.h:
 529
 530 interface/../general/utils.h:
 531
 532 interface/../general/userparams.h:
 533
 534 interface/../fileInput/FileReader.h:
 535
 536 interface/../alignment/Alignment.h:
 537
 538 interface/../alignment/AlignmentOutput.h:
 539
 540 /usr/include/c++/4.2.1/sstream:
 541
 542 /usr/include/c++/4.2.1/bits/sstream.tcc:
 543
 544 /usr/include/c++/4.2.1/cassert:
 545
 546 /usr/include/assert.h:
 547
 548 interface/../alignment/Alignment.h:
 549
 550 interface/../general/clustalw.h:
 551
 552 interface/../general/userparams.h:
 553
 554 interface/../general/utils.h:
 555
 556 interface/../substitutionMatrix/globalmatrix.h:
 557
 558 interface/CommandLineParser.h:
 559
 560 interface/../general/debuglogObject.h:
 561
 562 interface/../general/DebugLog.h:
 563
 564 interface/../general/statsObject.h:
 565
 566 interface/../general/Stats.h:
 567
 568 general/DebugLog.h:
 569
 570 general/ClustalWResources.h:
 571
 572 general/Stats.h: