website/archive/binaries/mac/src/tcoffee/t_coffee_source/source_list

   1 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/CUSTOM_evaluate_for_struc.c
   2 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/aln_compare.c
   3 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/aln_convertion_util.c
   4 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/dev1.c
   5 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/dev2.c
   6 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/dev3.c
   7 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/dev4.c
   8 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/diagonal.c
   9 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/evaluate.c
  10 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/evaluate_dirichlet.c
  11 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/evaluate_for_domain.c
  12 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/evaluate_for_struc.c
  13 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/fastal.c
  14 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/fastal_opt_parsing.c
  15 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/fsa_dp.c
  16 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/hsearch.c
  17 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/io_func.c
  18 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/iteration.c
  19 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/parttree.c
  20 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/pavie_dp.c
  21 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/pb_util_read_seq_util.c
  22 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/pb_util_read_sequence.c
  23 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/random.c
  24 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/reformat.c
  25 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/reformat_struc.c
  26 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/scoring.c
  27 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/showpair.c
  28 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/t_coffee.c
  29 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/tree.c
  30 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/tree_util.c
  31 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/util.c
  32 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/util_aln_analyze.c
  33 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/util_analyse_constraints_list.c
  34 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/util_constraints_list.c
  35 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/util_declare.c
  36 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/util_domain_constraints_list.c
  37 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/util_domain_dp.c
  38 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/util_domain_dp_drivers.c
  39 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/util_dp_cdna_fasta_nw.c
  40 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/util_dp_clean_maln.c
  41 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/util_dp_drivers.c
  42 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/util_dp_est.c
  43 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/util_dp_fasta_nw.c
  44 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/util_dp_fasta_sw.c
  45 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/util_dp_generic_fasta_nw.c
  46 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/util_dp_gotoh_nw.c
  47 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/util_dp_gotoh_sw.c
  48 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/util_dp_mm_nw.c
  49 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/util_dp_sim.c
  50 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/util_dp_ssec_pwaln.c
  51 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/util_dp_suboptimal_nw.c
  52 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/util_dps.c
  53 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/util_graph_maln.c
  54 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/util_job_handling.c
  55 /Users/admin/tcoffee_ci/sandbox/distributions/T-COFFEE_distribution_Version_8.99/t_coffee_source/util_make_tree.c