1 <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
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5 <!-- Generated by javadoc (build 1.6.0_24) on Wed Dec 07 12:08:25 GMT 2011 -->
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10 <META NAME="date" CONTENT="2011-12-07">
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12 <LINK REL ="stylesheet" TYPE="text/css" HREF="stylesheet.css" TITLE="Style">
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17 <BODY BGCOLOR="white">
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18 <FONT size="+1" CLASS="FrameHeadingFont">
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19 <B>All Classes</B></FONT>
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22 <TABLE BORDER="0" WIDTH="100%" SUMMARY="">
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24 <TD NOWRAP><FONT CLASS="FrameItemFont"><A HREF="compbio/ws/client/AAConClient.html" title="class in compbio.ws.client" target="classFrame">AAConClient</A>
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26 <A HREF="compbio/data/msa/jaxws/Align.html" title="class in compbio.data.msa.jaxws" target="classFrame">Align</A>
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28 <A HREF="compbio/data/sequence/Alignment.html" title="class in compbio.data.sequence" target="classFrame">Alignment</A>
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30 <A HREF="compbio/data/sequence/AlignmentMetadata.html" title="class in compbio.data.sequence" target="classFrame">AlignmentMetadata</A>
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32 <A HREF="compbio/data/msa/jaxws/AlignResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">AlignResponse</A>
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34 <A HREF="compbio/data/msa/jaxws/Analize.html" title="class in compbio.data.msa.jaxws" target="classFrame">Analize</A>
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36 <A HREF="compbio/data/msa/jaxws/AnalizeResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">AnalizeResponse</A>
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38 <A HREF="compbio/metadata/Argument.html" title="interface in compbio.metadata" target="classFrame"><I>Argument</I></A>
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40 <A HREF="compbio/data/msa/jaxws/CancelJob.html" title="class in compbio.data.msa.jaxws" target="classFrame">CancelJob</A>
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42 <A HREF="compbio/data/msa/jaxws/CancelJobResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">CancelJobResponse</A>
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44 <A HREF="compbio/data/msa/Category.html" title="class in compbio.data.msa" target="classFrame">Category</A>
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46 <A HREF="compbio/metadata/ChunkHolder.html" title="class in compbio.metadata" target="classFrame">ChunkHolder</A>
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48 <A HREF="compbio/data/sequence/ClustalAlignmentUtil.html" title="class in compbio.data.sequence" target="classFrame">ClustalAlignmentUtil</A>
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50 <A HREF="compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence" target="classFrame">ConservationMethod</A>
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52 <A HREF="compbio/data/msa/jaxws/CustomAlign.html" title="class in compbio.data.msa.jaxws" target="classFrame">CustomAlign</A>
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54 <A HREF="compbio/data/msa/jaxws/CustomAlignResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">CustomAlignResponse</A>
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56 <A HREF="compbio/data/msa/jaxws/CustomAnalize.html" title="class in compbio.data.msa.jaxws" target="classFrame">CustomAnalize</A>
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58 <A HREF="compbio/data/msa/jaxws/CustomAnalizeResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">CustomAnalizeResponse</A>
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60 <A HREF="compbio/data/sequence/DisorderMethod.html" title="enum in compbio.data.sequence" target="classFrame">DisorderMethod</A>
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62 <A HREF="compbio/data/sequence/FastaReader.html" title="class in compbio.data.sequence" target="classFrame">FastaReader</A>
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64 <A HREF="compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence" target="classFrame">FastaSequence</A>
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66 <A HREF="compbio/data/msa/jaxws/GetAnnotation.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetAnnotation</A>
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68 <A HREF="compbio/data/msa/jaxws/GetAnnotationResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetAnnotationResponse</A>
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70 <A HREF="compbio/data/msa/jaxws/GetJobStatus.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetJobStatus</A>
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72 <A HREF="compbio/data/msa/jaxws/GetJobStatusResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetJobStatusResponse</A>
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74 <A HREF="compbio/data/msa/jaxws/GetLastTested.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetLastTested</A>
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76 <A HREF="compbio/data/msa/jaxws/GetLastTestedOn.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetLastTestedOn</A>
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78 <A HREF="compbio/data/msa/jaxws/GetLastTestedOnResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetLastTestedOnResponse</A>
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80 <A HREF="compbio/data/msa/jaxws/GetLastTestedResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetLastTestedResponse</A>
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82 <A HREF="compbio/data/msa/jaxws/GetLimit.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetLimit</A>
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84 <A HREF="compbio/data/msa/jaxws/GetLimitResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetLimitResponse</A>
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86 <A HREF="compbio/data/msa/jaxws/GetLimits.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetLimits</A>
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88 <A HREF="compbio/data/msa/jaxws/GetLimitsResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetLimitsResponse</A>
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90 <A HREF="compbio/data/msa/jaxws/GetPresets.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetPresets</A>
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92 <A HREF="compbio/data/msa/jaxws/GetPresetsResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetPresetsResponse</A>
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94 <A HREF="compbio/data/msa/jaxws/GetResult.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetResult</A>
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96 <A HREF="compbio/data/msa/jaxws/GetResultResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetResultResponse</A>
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98 <A HREF="compbio/data/msa/jaxws/GetRunnerOptions.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetRunnerOptions</A>
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100 <A HREF="compbio/data/msa/jaxws/GetRunnerOptionsResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetRunnerOptionsResponse</A>
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102 <A HREF="compbio/data/msa/jaxws/GetServiceCategories.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetServiceCategories</A>
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104 <A HREF="compbio/data/msa/jaxws/GetServiceCategoriesResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetServiceCategoriesResponse</A>
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106 <A HREF="compbio/data/msa/jaxws/GetServiceDescription.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetServiceDescription</A>
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108 <A HREF="compbio/data/msa/jaxws/GetServiceDescriptionResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetServiceDescriptionResponse</A>
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110 <A HREF="compbio/data/msa/jaxws/GetSupportedServices.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetSupportedServices</A>
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112 <A HREF="compbio/data/msa/jaxws/GetSupportedServicesResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetSupportedServicesResponse</A>
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114 <A HREF="compbio/ws/client/IOHelper.html" title="class in compbio.ws.client" target="classFrame">IOHelper</A>
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116 <A HREF="compbio/data/msa/jaxws/IsOperating.html" title="class in compbio.data.msa.jaxws" target="classFrame">IsOperating</A>
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118 <A HREF="compbio/data/msa/jaxws/IsOperatingResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">IsOperatingResponse</A>
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120 <A HREF="compbio/data/msa/JABAService.html" title="interface in compbio.data.msa" target="classFrame"><I>JABAService</I></A>
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122 <A HREF="compbio/data/msa/JManagement.html" title="interface in compbio.data.msa" target="classFrame"><I>JManagement</I></A>
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124 <A HREF="compbio/metadata/JobExecutionException.html" title="class in compbio.metadata" target="classFrame">JobExecutionException</A>
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126 <A HREF="compbio/metadata/JobStatus.html" title="enum in compbio.metadata" target="classFrame">JobStatus</A>
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128 <A HREF="compbio/metadata/JobSubmissionException.html" title="class in compbio.metadata" target="classFrame">JobSubmissionException</A>
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130 <A HREF="compbio/data/msa/jaxws/JobSubmissionExceptionBean.html" title="class in compbio.data.msa.jaxws" target="classFrame">JobSubmissionExceptionBean</A>
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132 <A HREF="compbio/ws/client/Jws2Client.html" title="class in compbio.ws.client" target="classFrame">Jws2Client</A>
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134 <A HREF="compbio/metadata/Limit.html" title="class in compbio.metadata" target="classFrame">Limit</A>
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136 <A HREF="compbio/metadata/LimitExceededException.html" title="class in compbio.metadata" target="classFrame">LimitExceededException</A>
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138 <A HREF="compbio/data/msa/jaxws/LimitExceededExceptionBean.html" title="class in compbio.data.msa.jaxws" target="classFrame">LimitExceededExceptionBean</A>
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140 <A HREF="compbio/metadata/LimitsManager.html" title="class in compbio.metadata" target="classFrame">LimitsManager</A>
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142 <A HREF="compbio/data/msa/Metadata.html" title="interface in compbio.data.msa" target="classFrame"><I>Metadata</I></A>
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144 <A HREF="compbio/ws/client/MetadataHelper.html" title="class in compbio.ws.client" target="classFrame">MetadataHelper</A>
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146 <A HREF="compbio/data/msa/MsaWS.html" title="interface in compbio.data.msa" target="classFrame"><I>MsaWS</I></A>
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148 <A HREF="compbio/metadata/Option.html" title="class in compbio.metadata" target="classFrame">Option</A>
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150 <A HREF="compbio/metadata/Parameter.html" title="class in compbio.metadata" target="classFrame">Parameter</A>
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152 <A HREF="compbio/metadata/Preset.html" title="class in compbio.metadata" target="classFrame">Preset</A>
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154 <A HREF="compbio/data/msa/jaxws/PresetAlign.html" title="class in compbio.data.msa.jaxws" target="classFrame">PresetAlign</A>
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156 <A HREF="compbio/data/msa/jaxws/PresetAlignResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">PresetAlignResponse</A>
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158 <A HREF="compbio/data/msa/jaxws/PresetAnalize.html" title="class in compbio.data.msa.jaxws" target="classFrame">PresetAnalize</A>
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160 <A HREF="compbio/data/msa/jaxws/PresetAnalizeResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">PresetAnalizeResponse</A>
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162 <A HREF="compbio/metadata/PresetManager.html" title="class in compbio.metadata" target="classFrame">PresetManager</A>
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164 <A HREF="compbio/data/sequence/Program.html" title="enum in compbio.data.sequence" target="classFrame">Program</A>
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166 <A HREF="compbio/data/msa/jaxws/PullExecStatistics.html" title="class in compbio.data.msa.jaxws" target="classFrame">PullExecStatistics</A>
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168 <A HREF="compbio/data/msa/jaxws/PullExecStatisticsResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">PullExecStatisticsResponse</A>
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170 <A HREF="compbio/data/sequence/Range.html" title="class in compbio.data.sequence" target="classFrame">Range</A>
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172 <A HREF="compbio/data/msa/RegistryWS.html" title="interface in compbio.data.msa" target="classFrame"><I>RegistryWS</I></A>
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174 <A HREF="compbio/metadata/ResultNotAvailableException.html" title="class in compbio.metadata" target="classFrame">ResultNotAvailableException</A>
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176 <A HREF="compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.html" title="class in compbio.data.msa.jaxws" target="classFrame">ResultNotAvailableExceptionBean</A>
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178 <A HREF="compbio/metadata/RunnerConfig.html" title="class in compbio.metadata" target="classFrame">RunnerConfig</A>
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180 <A HREF="compbio/data/sequence/Score.html" title="class in compbio.data.sequence" target="classFrame">Score</A>
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182 <A HREF="compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence" target="classFrame">ScoreManager</A>
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184 <A HREF="compbio/data/sequence/ScoreManager.ScoreHolder.html" title="class in compbio.data.sequence" target="classFrame">ScoreManager.ScoreHolder</A>
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186 <A HREF="compbio/data/msa/SequenceAnnotation.html" title="interface in compbio.data.msa" target="classFrame"><I>SequenceAnnotation</I></A>
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188 <A HREF="compbio/data/sequence/SequenceUtil.html" title="class in compbio.data.sequence" target="classFrame">SequenceUtil</A>
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190 <A HREF="compbio/ws/client/Services.html" title="enum in compbio.ws.client" target="classFrame">Services</A>
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192 <A HREF="compbio/ws/client/ServicesUtil.html" title="class in compbio.ws.client" target="classFrame">ServicesUtil</A>
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194 <A HREF="compbio/data/sequence/SMERFSConstraints.html" title="enum in compbio.data.sequence" target="classFrame">SMERFSConstraints</A>
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196 <A HREF="compbio/data/msa/jaxws/TestAllServices.html" title="class in compbio.data.msa.jaxws" target="classFrame">TestAllServices</A>
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198 <A HREF="compbio/data/msa/jaxws/TestAllServicesResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">TestAllServicesResponse</A>
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200 <A HREF="compbio/data/msa/jaxws/TestService.html" title="class in compbio.data.msa.jaxws" target="classFrame">TestService</A>
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202 <A HREF="compbio/data/msa/jaxws/TestServiceResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">TestServiceResponse</A>
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204 <A HREF="compbio/data/sequence/UnknownFileFormatException.html" title="class in compbio.data.sequence" target="classFrame">UnknownFileFormatException</A>
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206 <A HREF="compbio/metadata/UnsupportedRuntimeException.html" title="class in compbio.metadata" target="classFrame">UnsupportedRuntimeException</A>
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208 <A HREF="compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.html" title="class in compbio.data.msa.jaxws" target="classFrame">UnsupportedRuntimeExceptionBean</A>
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210 <A HREF="compbio/metadata/ValueConstrain.html" title="class in compbio.metadata" target="classFrame">ValueConstrain</A>
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212 <A HREF="compbio/metadata/ValueConstrain.Type.html" title="enum in compbio.metadata" target="classFrame">ValueConstrain.Type</A>
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214 <A HREF="compbio/metadata/WrongParameterException.html" title="class in compbio.metadata" target="classFrame">WrongParameterException</A>
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216 <A HREF="compbio/data/msa/jaxws/WrongParameterExceptionBean.html" title="class in compbio.data.msa.jaxws" target="classFrame">WrongParameterExceptionBean</A>
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218 <A HREF="compbio/ws/client/WSTester.html" title="class in compbio.ws.client" target="classFrame">WSTester</A>
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