website/dm_javadoc/compbio/data/sequence/AlignmentMetadata.html

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  91 compbio.data.sequence</FONT>\r
  92 <BR>\r
  93 Class AlignmentMetadata</H2>\r
  94 <PRE>\r
  95 <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">java.lang.Object</A>\r
  96   <IMG SRC="../../../resources/inherit.gif" ALT="extended by "><B>compbio.data.sequence.AlignmentMetadata</B>\r
  97 </PRE>\r
  98 <HR>\r
  99 <DL>\r
 100 <DT><PRE><FONT SIZE="-1">@Immutable\r
 101 </FONT>public class <B>AlignmentMetadata</B><DT>extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></DL>\r
 102 </PRE>\r
 103 \r
 104 <P>\r
 105 Alignment metadata e.g. method/program being used to generate the alignment
 106  and its parameters\r
 107 <P>\r
 108 \r
 109 <P>\r
 110 <DL>\r
 111 <DT><B>Version:</B></DT>\r
 112   <DD>1.0 September 2009</DD>\r
 113 <DT><B>Author:</B></DT>\r
 114   <DD>pvtroshin</DD>\r
 115 </DL>\r
 116 <HR>\r
 117 \r
 118 <P>\r
 119 \r
 120 <!-- ======== CONSTRUCTOR SUMMARY ======== -->\r
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 126 <B>Constructor Summary</B></FONT></TH>\r
 127 </TR>\r
 128 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 129 <TD><CODE><B><A HREF="../../../compbio/data/sequence/AlignmentMetadata.html#AlignmentMetadata(compbio.data.sequence.Program, char)">AlignmentMetadata</A></B>(<A HREF="../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</A>&nbsp;program,\r
 130                   char&nbsp;gapchar)</CODE>\r
 131 \r
 132 <BR>\r
 133 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
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 144 </TR>\r
 145 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 146 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 147 <CODE>&nbsp;boolean</CODE></FONT></TD>\r
 148 <TD><CODE><B><A HREF="../../../compbio/data/sequence/AlignmentMetadata.html#equals(java.lang.Object)">equals</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A>&nbsp;obj)</CODE>\r
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 152 </TR>\r
 153 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 154 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 155 <CODE>&nbsp;char</CODE></FONT></TD>\r
 156 <TD><CODE><B><A HREF="../../../compbio/data/sequence/AlignmentMetadata.html#getGapchar()">getGapchar</A></B>()</CODE>\r
 157 \r
 158 <BR>\r
 159 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 160 </TR>\r
 161 <TR BGCOLOR="white" CLASS="TableRowColor">\r
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 163 <CODE>&nbsp;<A HREF="../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</A></CODE></FONT></TD>\r
 164 <TD><CODE><B><A HREF="../../../compbio/data/sequence/AlignmentMetadata.html#getProgram()">getProgram</A></B>()</CODE>\r
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 171 <CODE>&nbsp;int</CODE></FONT></TD>\r
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 185 </TR>\r
 186 </TABLE>\r
 187 &nbsp;\r
 188 <P>\r
 189 \r
 190 <!-- ========= CONSTRUCTOR DETAIL ======== -->\r
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 197 </TR>\r
 198 </TABLE>\r
 199 \r
 200 <A NAME="AlignmentMetadata(compbio.data.sequence.Program, char)"><!-- --></A><H3>\r
 201 AlignmentMetadata</H3>\r
 202 <PRE>\r
 203 public <B>AlignmentMetadata</B>(<A HREF="../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</A>&nbsp;program,\r
 204                          char&nbsp;gapchar)</PRE>\r
 205 <DL>\r
 206 </DL>\r
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 214 <B>Method Detail</B></FONT></TH>\r
 215 </TR>\r
 216 </TABLE>\r
 217 \r
 218 <A NAME="getProgram()"><!-- --></A><H3>\r
 219 getProgram</H3>\r
 220 <PRE>\r
 221 public <A HREF="../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</A> <B>getProgram</B>()</PRE>\r
 222 <DL>\r
 223 <DD><DL>\r
 224 </DL>\r
 225 </DD>\r
 226 </DL>\r
 227 <HR>\r
 228 \r
 229 <A NAME="getGapchar()"><!-- --></A><H3>\r
 230 getGapchar</H3>\r
 231 <PRE>\r
 232 public char <B>getGapchar</B>()</PRE>\r
 233 <DL>\r
 234 <DD><DL>\r
 235 </DL>\r
 236 </DD>\r
 237 </DL>\r
 238 <HR>\r
 239 \r
 240 <A NAME="equals(java.lang.Object)"><!-- --></A><H3>\r
 241 equals</H3>\r
 242 <PRE>\r
 243 public boolean <B>equals</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A>&nbsp;obj)</PRE>\r
 244 <DL>\r
 245 <DD><DL>\r
 246 <DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#equals(java.lang.Object)" title="class or interface in java.lang">equals</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>\r
 247 </DD>\r
 248 <DD><DL>\r
 249 </DL>\r
 250 </DD>\r
 251 </DL>\r
 252 <HR>\r
 253 \r
 254 <A NAME="hashCode()"><!-- --></A><H3>\r
 255 hashCode</H3>\r
 256 <PRE>\r
 257 public int <B>hashCode</B>()</PRE>\r
 258 <DL>\r
 259 <DD><DL>\r
 260 <DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#hashCode()" title="class or interface in java.lang">hashCode</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>\r
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