website/dm_javadoc/compbio/data/sequence/FastaSequence.html

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  79   SUMMARY:&nbsp;NESTED&nbsp;|&nbsp;FIELD&nbsp;|&nbsp;<A HREF="#constructor_summary">CONSTR</A>&nbsp;|&nbsp;<A HREF="#method_summary">METHOD</A></FONT></TD>\r
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  91 compbio.data.sequence</FONT>\r
  92 <BR>\r
  93 Class FastaSequence</H2>\r
  94 <PRE>\r
  95 <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">java.lang.Object</A>\r
  96   <IMG SRC="../../../resources/inherit.gif" ALT="extended by "><B>compbio.data.sequence.FastaSequence</B>\r
  97 </PRE>\r
  98 <DL>\r
  99 <DT><B>Direct Known Subclasses:</B> <DD><A HREF="../../../compbio/data/sequence/AnnotatedSequence.html" title="class in compbio.data.sequence">AnnotatedSequence</A></DD>\r
 100 </DL>\r
 101 <HR>\r
 102 <DL>\r
 103 <DT><PRE><FONT SIZE="-1">@Immutable\r
 104 </FONT>public class <B>FastaSequence</B><DT>extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></DL>\r
 105 </PRE>\r
 106 \r
 107 <P>\r
 108 A FASTA formatted sequence. Please note that this class does not make any
 109  assumptions as to what sequence it stores e.g. it could be nucleotide,
 110  protein or even gapped alignment sequence! The only guarantee it makes is
 111  that the sequence does not contain white space characters e.g. spaces, new
 112  lines etc\r
 113 <P>\r
 114 \r
 115 <P>\r
 116 <DL>\r
 117 <DT><B>Version:</B></DT>\r
 118   <DD>1.0 September 2009</DD>\r
 119 <DT><B>Author:</B></DT>\r
 120   <DD>pvtroshin</DD>\r
 121 </DL>\r
 122 <HR>\r
 123 \r
 124 <P>\r
 125 \r
 126 <!-- ======== CONSTRUCTOR SUMMARY ======== -->\r
 127 \r
 128 <A NAME="constructor_summary"><!-- --></A>\r
 129 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 130 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 131 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 132 <B>Constructor Summary</B></FONT></TH>\r
 133 </TR>\r
 134 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 135 <TD><CODE><B><A HREF="../../../compbio/data/sequence/FastaSequence.html#FastaSequence(java.lang.String, java.lang.String)">FastaSequence</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;id,\r
 136               <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;sequence)</CODE>\r
 137 \r
 138 <BR>\r
 139 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Upon construction the any whitespace characters are removed from the
 140  sequence</TD>\r
 141 </TR>\r
 142 </TABLE>\r
 143 &nbsp;\r
 144 <!-- ========== METHOD SUMMARY =========== -->\r
 145 \r
 146 <A NAME="method_summary"><!-- --></A>\r
 147 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 148 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 149 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 150 <B>Method Summary</B></FONT></TH>\r
 151 </TR>\r
 152 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 153 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 154 <CODE>static&nbsp;int</CODE></FONT></TD>\r
 155 <TD><CODE><B><A HREF="../../../compbio/data/sequence/FastaSequence.html#countMatchesInSequence(java.lang.String, java.lang.String)">countMatchesInSequence</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;theString,\r
 156                        <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;theRegExp)</CODE>\r
 157 \r
 158 <BR>\r
 159 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 160 </TR>\r
 161 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 162 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 163 <CODE>&nbsp;boolean</CODE></FONT></TD>\r
 164 <TD><CODE><B><A HREF="../../../compbio/data/sequence/FastaSequence.html#equals(java.lang.Object)">equals</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A>&nbsp;obj)</CODE>\r
 165 \r
 166 <BR>\r
 167 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 168 </TR>\r
 169 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 170 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 171 <CODE>&nbsp;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>\r
 172 <TD><CODE><B><A HREF="../../../compbio/data/sequence/FastaSequence.html#getFormatedSequence(int)">getFormatedSequence</A></B>(int&nbsp;width)</CODE>\r
 173 \r
 174 <BR>\r
 175 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Format sequence per width letter in one string.</TD>\r
 176 </TR>\r
 177 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 178 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 179 <CODE>&nbsp;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>\r
 180 <TD><CODE><B><A HREF="../../../compbio/data/sequence/FastaSequence.html#getFormattedFasta()">getFormattedFasta</A></B>()</CODE>\r
 181 \r
 182 <BR>\r
 183 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 184 </TR>\r
 185 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 186 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 187 <CODE>&nbsp;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>\r
 188 <TD><CODE><B><A HREF="../../../compbio/data/sequence/FastaSequence.html#getId()">getId</A></B>()</CODE>\r
 189 \r
 190 <BR>\r
 191 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Gets the value of id</TD>\r
 192 </TR>\r
 193 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 194 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 195 <CODE>&nbsp;int</CODE></FONT></TD>\r
 196 <TD><CODE><B><A HREF="../../../compbio/data/sequence/FastaSequence.html#getLength()">getLength</A></B>()</CODE>\r
 197 \r
 198 <BR>\r
 199 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 200 </TR>\r
 201 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 202 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 203 <CODE>&nbsp;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>\r
 204 <TD><CODE><B><A HREF="../../../compbio/data/sequence/FastaSequence.html#getOnelineFasta()">getOnelineFasta</A></B>()</CODE>\r
 205 \r
 206 <BR>\r
 207 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 208 </TR>\r
 209 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 210 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 211 <CODE>&nbsp;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>\r
 212 <TD><CODE><B><A HREF="../../../compbio/data/sequence/FastaSequence.html#getSequence()">getSequence</A></B>()</CODE>\r
 213 \r
 214 <BR>\r
 215 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Gets the value of sequence</TD>\r
 216 </TR>\r
 217 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 218 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 219 <CODE>&nbsp;int</CODE></FONT></TD>\r
 220 <TD><CODE><B><A HREF="../../../compbio/data/sequence/FastaSequence.html#hashCode()">hashCode</A></B>()</CODE>\r
 221 \r
 222 <BR>\r
 223 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 224 </TR>\r
 225 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 226 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 227 <CODE>&nbsp;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>\r
 228 <TD><CODE><B><A HREF="../../../compbio/data/sequence/FastaSequence.html#toString()">toString</A></B>()</CODE>\r
 229 \r
 230 <BR>\r
 231 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Same as oneLineFasta</TD>\r
 232 </TR>\r
 233 </TABLE>\r
 234 &nbsp;<A NAME="methods_inherited_from_class_java.lang.Object"><!-- --></A>\r
 235 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 236 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">\r
 237 <TH ALIGN="left"><B>Methods inherited from class java.lang.<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></B></TH>\r
 238 </TR>\r
 239 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 240 <TD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#getClass()" title="class or interface in java.lang">getClass</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notify()" title="class or interface in java.lang">notify</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notifyAll()" title="class or interface in java.lang">notifyAll</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait()" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long)" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long, int)" title="class or interface in java.lang">wait</A></CODE></TD>\r
 241 </TR>\r
 242 </TABLE>\r
 243 &nbsp;\r
 244 <P>\r
 245 \r
 246 <!-- ========= CONSTRUCTOR DETAIL ======== -->\r
 247 \r
 248 <A NAME="constructor_detail"><!-- --></A>\r
 249 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 250 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 251 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
 252 <B>Constructor Detail</B></FONT></TH>\r
 253 </TR>\r
 254 </TABLE>\r
 255 \r
 256 <A NAME="FastaSequence(java.lang.String, java.lang.String)"><!-- --></A><H3>\r
 257 FastaSequence</H3>\r
 258 <PRE>\r
 259 public <B>FastaSequence</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;id,\r
 260                      <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;sequence)</PRE>\r
 261 <DL>\r
 262 <DD>Upon construction the any whitespace characters are removed from the
 263  sequence\r
 264 <P>\r
 265 <DL>\r
 266 <DT><B>Parameters:</B><DD><CODE>id</CODE> - <DD><CODE>sequence</CODE> - </DL>\r
 267 </DL>\r
 268 \r
 269 <!-- ============ METHOD DETAIL ========== -->\r
 270 \r
 271 <A NAME="method_detail"><!-- --></A>\r
 272 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 273 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 274 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
 275 <B>Method Detail</B></FONT></TH>\r
 276 </TR>\r
 277 </TABLE>\r
 278 \r
 279 <A NAME="getId()"><!-- --></A><H3>\r
 280 getId</H3>\r
 281 <PRE>\r
 282 public <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>getId</B>()</PRE>\r
 283 <DL>\r
 284 <DD>Gets the value of id\r
 285 <P>\r
 286 <DD><DL>\r
 287 \r
 288 <DT><B>Returns:</B><DD>the value of id</DL>\r
 289 </DD>\r
 290 </DL>\r
 291 <HR>\r
 292 \r
 293 <A NAME="getSequence()"><!-- --></A><H3>\r
 294 getSequence</H3>\r
 295 <PRE>\r
 296 public <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>getSequence</B>()</PRE>\r
 297 <DL>\r
 298 <DD>Gets the value of sequence\r
 299 <P>\r
 300 <DD><DL>\r
 301 \r
 302 <DT><B>Returns:</B><DD>the value of sequence</DL>\r
 303 </DD>\r
 304 </DL>\r
 305 <HR>\r
 306 \r
 307 <A NAME="countMatchesInSequence(java.lang.String, java.lang.String)"><!-- --></A><H3>\r
 308 countMatchesInSequence</H3>\r
 309 <PRE>\r
 310 public static int <B>countMatchesInSequence</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;theString,\r
 311                                          <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;theRegExp)</PRE>\r
 312 <DL>\r
 313 <DD><DL>\r
 314 </DL>\r
 315 </DD>\r
 316 </DL>\r
 317 <HR>\r
 318 \r
 319 <A NAME="getFormattedFasta()"><!-- --></A><H3>\r
 320 getFormattedFasta</H3>\r
 321 <PRE>\r
 322 public <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>getFormattedFasta</B>()</PRE>\r
 323 <DL>\r
 324 <DD><DL>\r
 325 </DL>\r
 326 </DD>\r
 327 </DL>\r
 328 <HR>\r
 329 \r
 330 <A NAME="getOnelineFasta()"><!-- --></A><H3>\r
 331 getOnelineFasta</H3>\r
 332 <PRE>\r
 333 public <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>getOnelineFasta</B>()</PRE>\r
 334 <DL>\r
 335 <DD><DL>\r
 336 \r
 337 <DT><B>Returns:</B><DD>one line name, next line sequence, no matter what the sequence
 338          length is</DL>\r
 339 </DD>\r
 340 </DL>\r
 341 <HR>\r
 342 \r
 343 <A NAME="getFormatedSequence(int)"><!-- --></A><H3>\r
 344 getFormatedSequence</H3>\r
 345 <PRE>\r
 346 public <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>getFormatedSequence</B>(int&nbsp;width)</PRE>\r
 347 <DL>\r
 348 <DD>Format sequence per width letter in one string. Without spaces.\r
 349 <P>\r
 350 <DD><DL>\r
 351 \r
 352 <DT><B>Returns:</B><DD>multiple line formated sequence, one line width letters length</DL>\r
 353 </DD>\r
 354 </DL>\r
 355 <HR>\r
 356 \r
 357 <A NAME="getLength()"><!-- --></A><H3>\r
 358 getLength</H3>\r
 359 <PRE>\r
 360 public int <B>getLength</B>()</PRE>\r
 361 <DL>\r
 362 <DD><DL>\r
 363 \r
 364 <DT><B>Returns:</B><DD>sequence length</DL>\r
 365 </DD>\r
 366 </DL>\r
 367 <HR>\r
 368 \r
 369 <A NAME="toString()"><!-- --></A><H3>\r
 370 toString</H3>\r
 371 <PRE>\r
 372 public <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>toString</B>()</PRE>\r
 373 <DL>\r
 374 <DD>Same as oneLineFasta\r
 375 <P>\r
 376 <DD><DL>\r
 377 <DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#toString()" title="class or interface in java.lang">toString</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>\r
 378 </DD>\r
 379 <DD><DL>\r
 380 </DL>\r
 381 </DD>\r
 382 </DL>\r
 383 <HR>\r
 384 \r
 385 <A NAME="hashCode()"><!-- --></A><H3>\r
 386 hashCode</H3>\r
 387 <PRE>\r
 388 public int <B>hashCode</B>()</PRE>\r
 389 <DL>\r
 390 <DD><DL>\r
 391 <DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#hashCode()" title="class or interface in java.lang">hashCode</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>\r
 392 </DD>\r
 393 <DD><DL>\r
 394 </DL>\r
 395 </DD>\r
 396 </DL>\r
 397 <HR>\r
 398 \r
 399 <A NAME="equals(java.lang.Object)"><!-- --></A><H3>\r
 400 equals</H3>\r
 401 <PRE>\r
 402 public boolean <B>equals</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A>&nbsp;obj)</PRE>\r
 403 <DL>\r
 404 <DD><DL>\r
 405 <DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#equals(java.lang.Object)" title="class or interface in java.lang">equals</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>\r
 406 </DD>\r
 407 <DD><DL>\r
 408 </DL>\r
 409 </DD>\r
 410 </DL>\r
 411 <!-- ========= END OF CLASS DATA ========= -->\r
 412 <HR>\r
 413 \r
 414 \r
 415 <!-- ======= START OF BOTTOM NAVBAR ====== -->\r
 416 <A NAME="navbar_bottom"><!-- --></A>\r
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 418 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">\r
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 421 <A NAME="navbar_bottom_firstrow"><!-- --></A>\r
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 427   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="class-use/FastaSequence.html"><FONT CLASS="NavBarFont1"><B>Use</B></FONT></A>&nbsp;</TD>\r
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 429   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>\r
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 435 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
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 438 </TR>\r
 439 \r
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 444 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
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 447 &nbsp;<SCRIPT type="text/javascript">\r
 448   <!--\r
 449   if(window==top) {\r
 450     document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>');\r
 451   }\r
 452   //-->\r
 453 </SCRIPT>\r
 454 <NOSCRIPT>\r
 455   <A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>\r
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 462 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
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