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7 MultiAnnotatedSequence
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91 compbio.data.sequence</FONT>
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93 Class MultiAnnotatedSequence<T extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Enum.html?is-external=true" title="class or interface in java.lang">Enum</A><T>></H2>
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95 <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">java.lang.Object</A>
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96 <IMG SRC="../../../resources/inherit.gif" ALT="extended by "><B>compbio.data.sequence.MultiAnnotatedSequence<T></B>
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99 <DT><DT><B>Type Parameters:</B><DD><CODE>T</CODE> - enum type</DL>
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102 <DT><PRE><FONT SIZE="-1">@NotThreadSafe
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103 </FONT>public class <B>MultiAnnotatedSequence<T extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Enum.html?is-external=true" title="class or interface in java.lang">Enum</A><T>></B><DT>extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></DL>
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112 <DT><B>Author:</B></DT>
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119 <!-- ======== CONSTRUCTOR SUMMARY ======== -->
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124 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
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125 <B>Constructor Summary</B></FONT></TH>
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127 <TR BGCOLOR="white" CLASS="TableRowColor">
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128 <TD><CODE><B><A HREF="../../../compbio/data/sequence/MultiAnnotatedSequence.html#MultiAnnotatedSequence(java.lang.Class)">MultiAnnotatedSequence</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Class.html?is-external=true" title="class or interface in java.lang">Class</A><<A HREF="../../../compbio/data/sequence/MultiAnnotatedSequence.html" title="type parameter in MultiAnnotatedSequence">T</A>> enumeration)</CODE>
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141 <B>Method Summary</B></FONT></TH>
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143 <TR BGCOLOR="white" CLASS="TableRowColor">
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144 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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145 <CODE> void</CODE></FONT></TD>
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146 <TD><CODE><B><A HREF="../../../compbio/data/sequence/MultiAnnotatedSequence.html#addAnnotation(T, java.util.ArrayList)">addAnnotation</A></B>(<A HREF="../../../compbio/data/sequence/MultiAnnotatedSequence.html" title="type parameter in MultiAnnotatedSequence">T</A> type,
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147 <A HREF="http://java.sun.com/javase/6/docs/api/java/util/ArrayList.html?is-external=true" title="class or interface in java.util">ArrayList</A><<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Float.html?is-external=true" title="class or interface in java.lang">Float</A>> annotation)</CODE>
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150 </TD>
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152 <TR BGCOLOR="white" CLASS="TableRowColor">
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153 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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154 <CODE> boolean</CODE></FONT></TD>
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155 <TD><CODE><B><A HREF="../../../compbio/data/sequence/MultiAnnotatedSequence.html#equals(java.lang.Object)">equals</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A> obj)</CODE>
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158 </TD>
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160 <TR BGCOLOR="white" CLASS="TableRowColor">
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161 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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162 <CODE> <A HREF="http://java.sun.com/javase/6/docs/api/java/util/Map.html?is-external=true" title="class or interface in java.util">Map</A><<A HREF="../../../compbio/data/sequence/MultiAnnotatedSequence.html" title="type parameter in MultiAnnotatedSequence">T</A>,<A HREF="http://java.sun.com/javase/6/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A><<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Float.html?is-external=true" title="class or interface in java.lang">Float</A>>></CODE></FONT></TD>
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163 <TD><CODE><B><A HREF="../../../compbio/data/sequence/MultiAnnotatedSequence.html#getAnnotations()">getAnnotations</A></B>()</CODE>
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166 </TD>
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168 <TR BGCOLOR="white" CLASS="TableRowColor">
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169 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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170 <CODE> int</CODE></FONT></TD>
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171 <TD><CODE><B><A HREF="../../../compbio/data/sequence/MultiAnnotatedSequence.html#hashCode()">hashCode</A></B>()</CODE>
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174 </TD>
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176 <TR BGCOLOR="white" CLASS="TableRowColor">
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177 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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178 <CODE> <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>
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179 <TD><CODE><B><A HREF="../../../compbio/data/sequence/MultiAnnotatedSequence.html#toString()">toString</A></B>()</CODE>
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182 </TD>
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188 <TH ALIGN="left"><B>Methods inherited from class java.lang.<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></B></TH>
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190 <TR BGCOLOR="white" CLASS="TableRowColor">
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191 <TD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#getClass()" title="class or interface in java.lang">getClass</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notify()" title="class or interface in java.lang">notify</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notifyAll()" title="class or interface in java.lang">notifyAll</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait()" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long)" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long, int)" title="class or interface in java.lang">wait</A></CODE></TD>
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202 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">
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203 <B>Constructor Detail</B></FONT></TH>
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207 <A NAME="MultiAnnotatedSequence(java.lang.Class)"><!-- --></A><H3>
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208 MultiAnnotatedSequence</H3>
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210 public <B>MultiAnnotatedSequence</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Class.html?is-external=true" title="class or interface in java.lang">Class</A><<A HREF="../../../compbio/data/sequence/MultiAnnotatedSequence.html" title="type parameter in MultiAnnotatedSequence">T</A>> enumeration)</PRE>
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219 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">
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220 <B>Method Detail</B></FONT></TH>
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224 <A NAME="addAnnotation(java.lang.Enum,java.util.ArrayList)"><!-- --></A><A NAME="addAnnotation(T, java.util.ArrayList)"><!-- --></A><H3>
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227 public void <B>addAnnotation</B>(<A HREF="../../../compbio/data/sequence/MultiAnnotatedSequence.html" title="type parameter in MultiAnnotatedSequence">T</A> type,
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228 <A HREF="http://java.sun.com/javase/6/docs/api/java/util/ArrayList.html?is-external=true" title="class or interface in java.util">ArrayList</A><<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Float.html?is-external=true" title="class or interface in java.lang">Float</A>> annotation)</PRE>
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236 <A NAME="getAnnotations()"><!-- --></A><H3>
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237 getAnnotations</H3>
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239 public <A HREF="http://java.sun.com/javase/6/docs/api/java/util/Map.html?is-external=true" title="class or interface in java.util">Map</A><<A HREF="../../../compbio/data/sequence/MultiAnnotatedSequence.html" title="type parameter in MultiAnnotatedSequence">T</A>,<A HREF="http://java.sun.com/javase/6/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A><<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Float.html?is-external=true" title="class or interface in java.lang">Float</A>>> <B>getAnnotations</B>()</PRE>
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247 <A NAME="hashCode()"><!-- --></A><H3>
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250 public int <B>hashCode</B>()</PRE>
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253 <DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#hashCode()" title="class or interface in java.lang">hashCode</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>
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261 <A NAME="equals(java.lang.Object)"><!-- --></A><H3>
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264 public boolean <B>equals</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A> obj)</PRE>
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267 <DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#equals(java.lang.Object)" title="class or interface in java.lang">equals</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>
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275 <A NAME="toString()"><!-- --></A><H3>
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278 public <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>toString</B>()</PRE>
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281 <DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#toString()" title="class or interface in java.lang">toString</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>
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