website/dm_javadoc/compbio/data/sequence/MultiAnnotatedSequence.html

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   7 MultiAnnotatedSequence\r
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  91 compbio.data.sequence</FONT>\r
  92 <BR>\r
  93 Class MultiAnnotatedSequence&lt;T extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Enum.html?is-external=true" title="class or interface in java.lang">Enum</A>&lt;T&gt;&gt;</H2>\r
  94 <PRE>\r
  95 <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">java.lang.Object</A>\r
  96   <IMG SRC="../../../resources/inherit.gif" ALT="extended by "><B>compbio.data.sequence.MultiAnnotatedSequence&lt;T&gt;</B>\r
  97 </PRE>\r
  98 <DL>\r
  99 <DT><DT><B>Type Parameters:</B><DD><CODE>T</CODE> - enum type</DL>\r
 100 <HR>\r
 101 <DL>\r
 102 <DT><PRE><FONT SIZE="-1">@NotThreadSafe\r
 103 </FONT>public class <B>MultiAnnotatedSequence&lt;T extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Enum.html?is-external=true" title="class or interface in java.lang">Enum</A>&lt;T&gt;&gt;</B><DT>extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></DL>\r
 104 </PRE>\r
 105 \r
 106 <P>\r
 107 TODO complete\r
 108 <P>\r
 109 \r
 110 <P>\r
 111 <DL>\r
 112 <DT><B>Author:</B></DT>\r
 113   <DD>pvtroshin</DD>\r
 114 </DL>\r
 115 <HR>\r
 116 \r
 117 <P>\r
 118 \r
 119 <!-- ======== CONSTRUCTOR SUMMARY ======== -->\r
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 124 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 125 <B>Constructor Summary</B></FONT></TH>\r
 126 </TR>\r
 127 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 128 <TD><CODE><B><A HREF="../../../compbio/data/sequence/MultiAnnotatedSequence.html#MultiAnnotatedSequence(java.lang.Class)">MultiAnnotatedSequence</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Class.html?is-external=true" title="class or interface in java.lang">Class</A>&lt;<A HREF="../../../compbio/data/sequence/MultiAnnotatedSequence.html" title="type parameter in MultiAnnotatedSequence">T</A>&gt;&nbsp;enumeration)</CODE>\r
 129 \r
 130 <BR>\r
 131 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 132 </TR>\r
 133 </TABLE>\r
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 135 <!-- ========== METHOD SUMMARY =========== -->\r
 136 \r
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 139 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 140 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 141 <B>Method Summary</B></FONT></TH>\r
 142 </TR>\r
 143 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 144 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 145 <CODE>&nbsp;void</CODE></FONT></TD>\r
 146 <TD><CODE><B><A HREF="../../../compbio/data/sequence/MultiAnnotatedSequence.html#addAnnotation(T, java.util.ArrayList)">addAnnotation</A></B>(<A HREF="../../../compbio/data/sequence/MultiAnnotatedSequence.html" title="type parameter in MultiAnnotatedSequence">T</A>&nbsp;type,\r
 147               <A HREF="http://java.sun.com/javase/6/docs/api/java/util/ArrayList.html?is-external=true" title="class or interface in java.util">ArrayList</A>&lt;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Float.html?is-external=true" title="class or interface in java.lang">Float</A>&gt;&nbsp;annotation)</CODE>\r
 148 \r
 149 <BR>\r
 150 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 151 </TR>\r
 152 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 153 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 154 <CODE>&nbsp;boolean</CODE></FONT></TD>\r
 155 <TD><CODE><B><A HREF="../../../compbio/data/sequence/MultiAnnotatedSequence.html#equals(java.lang.Object)">equals</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A>&nbsp;obj)</CODE>\r
 156 \r
 157 <BR>\r
 158 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 159 </TR>\r
 160 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 161 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 162 <CODE>&nbsp;<A HREF="http://java.sun.com/javase/6/docs/api/java/util/Map.html?is-external=true" title="class or interface in java.util">Map</A>&lt;<A HREF="../../../compbio/data/sequence/MultiAnnotatedSequence.html" title="type parameter in MultiAnnotatedSequence">T</A>,<A HREF="http://java.sun.com/javase/6/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A>&lt;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Float.html?is-external=true" title="class or interface in java.lang">Float</A>&gt;&gt;</CODE></FONT></TD>\r
 163 <TD><CODE><B><A HREF="../../../compbio/data/sequence/MultiAnnotatedSequence.html#getAnnotations()">getAnnotations</A></B>()</CODE>\r
 164 \r
 165 <BR>\r
 166 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 167 </TR>\r
 168 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 169 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 170 <CODE>&nbsp;int</CODE></FONT></TD>\r
 171 <TD><CODE><B><A HREF="../../../compbio/data/sequence/MultiAnnotatedSequence.html#hashCode()">hashCode</A></B>()</CODE>\r
 172 \r
 173 <BR>\r
 174 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 175 </TR>\r
 176 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 177 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 178 <CODE>&nbsp;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>\r
 179 <TD><CODE><B><A HREF="../../../compbio/data/sequence/MultiAnnotatedSequence.html#toString()">toString</A></B>()</CODE>\r
 180 \r
 181 <BR>\r
 182 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 183 </TR>\r
 184 </TABLE>\r
 185 &nbsp;<A NAME="methods_inherited_from_class_java.lang.Object"><!-- --></A>\r
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 188 <TH ALIGN="left"><B>Methods inherited from class java.lang.<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></B></TH>\r
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 192 </TR>\r
 193 </TABLE>\r
 194 &nbsp;\r
 195 <P>\r
 196 \r
 197 <!-- ========= CONSTRUCTOR DETAIL ======== -->\r
 198 \r
 199 <A NAME="constructor_detail"><!-- --></A>\r
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 201 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 202 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
 203 <B>Constructor Detail</B></FONT></TH>\r
 204 </TR>\r
 205 </TABLE>\r
 206 \r
 207 <A NAME="MultiAnnotatedSequence(java.lang.Class)"><!-- --></A><H3>\r
 208 MultiAnnotatedSequence</H3>\r
 209 <PRE>\r
 210 public <B>MultiAnnotatedSequence</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Class.html?is-external=true" title="class or interface in java.lang">Class</A>&lt;<A HREF="../../../compbio/data/sequence/MultiAnnotatedSequence.html" title="type parameter in MultiAnnotatedSequence">T</A>&gt;&nbsp;enumeration)</PRE>\r
 211 <DL>\r
 212 </DL>\r
 213 \r
 214 <!-- ============ METHOD DETAIL ========== -->\r
 215 \r
 216 <A NAME="method_detail"><!-- --></A>\r
 217 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 218 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 219 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
 220 <B>Method Detail</B></FONT></TH>\r
 221 </TR>\r
 222 </TABLE>\r
 223 \r
 224 <A NAME="addAnnotation(java.lang.Enum,java.util.ArrayList)"><!-- --></A><A NAME="addAnnotation(T, java.util.ArrayList)"><!-- --></A><H3>\r
 225 addAnnotation</H3>\r
 226 <PRE>\r
 227 public void <B>addAnnotation</B>(<A HREF="../../../compbio/data/sequence/MultiAnnotatedSequence.html" title="type parameter in MultiAnnotatedSequence">T</A>&nbsp;type,\r
 228                           <A HREF="http://java.sun.com/javase/6/docs/api/java/util/ArrayList.html?is-external=true" title="class or interface in java.util">ArrayList</A>&lt;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Float.html?is-external=true" title="class or interface in java.lang">Float</A>&gt;&nbsp;annotation)</PRE>\r
 229 <DL>\r
 230 <DD><DL>\r
 231 </DL>\r
 232 </DD>\r
 233 </DL>\r
 234 <HR>\r
 235 \r
 236 <A NAME="getAnnotations()"><!-- --></A><H3>\r
 237 getAnnotations</H3>\r
 238 <PRE>\r
 239 public <A HREF="http://java.sun.com/javase/6/docs/api/java/util/Map.html?is-external=true" title="class or interface in java.util">Map</A>&lt;<A HREF="../../../compbio/data/sequence/MultiAnnotatedSequence.html" title="type parameter in MultiAnnotatedSequence">T</A>,<A HREF="http://java.sun.com/javase/6/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A>&lt;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Float.html?is-external=true" title="class or interface in java.lang">Float</A>&gt;&gt; <B>getAnnotations</B>()</PRE>\r
 240 <DL>\r
 241 <DD><DL>\r
 242 </DL>\r
 243 </DD>\r
 244 </DL>\r
 245 <HR>\r
 246 \r
 247 <A NAME="hashCode()"><!-- --></A><H3>\r
 248 hashCode</H3>\r
 249 <PRE>\r
 250 public int <B>hashCode</B>()</PRE>\r
 251 <DL>\r
 252 <DD><DL>\r
 253 <DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#hashCode()" title="class or interface in java.lang">hashCode</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>\r
 254 </DD>\r
 255 <DD><DL>\r
 256 </DL>\r
 257 </DD>\r
 258 </DL>\r
 259 <HR>\r
 260 \r
 261 <A NAME="equals(java.lang.Object)"><!-- --></A><H3>\r
 262 equals</H3>\r
 263 <PRE>\r
 264 public boolean <B>equals</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A>&nbsp;obj)</PRE>\r
 265 <DL>\r
 266 <DD><DL>\r
 267 <DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#equals(java.lang.Object)" title="class or interface in java.lang">equals</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>\r
 268 </DD>\r
 269 <DD><DL>\r
 270 </DL>\r
 271 </DD>\r
 272 </DL>\r
 273 <HR>\r
 274 \r
 275 <A NAME="toString()"><!-- --></A><H3>\r
 276 toString</H3>\r
 277 <PRE>\r
 278 public <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>toString</B>()</PRE>\r
 279 <DL>\r
 280 <DD><DL>\r
 281 <DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#toString()" title="class or interface in java.lang">toString</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>\r
 282 </DD>\r
 283 <DD><DL>\r
 284 </DL>\r
 285 </DD>\r
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