Refactored client class to accomodate new WS interface and reduce the complexity
[jabaws.git] / website / dm_javadoc / compbio / data / sequence / package-use.html
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7 Uses of Package compbio.data.sequence\r
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84 <B>Uses of Package<br>compbio.data.sequence</B></H2>\r
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86 \r
87 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
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90 Packages that use <A HREF="../../../compbio/data/sequence/package-summary.html">compbio.data.sequence</A></FONT></TH>\r
91 </TR>\r
92 <TR BGCOLOR="white" CLASS="TableRowColor">\r
93 <TD><A HREF="#compbio.data.msa"><B>compbio.data.msa</B></A></TD>\r
94 <TD>Web Service interfaces for JAva Bioinformatics Analysis Web Services.&nbsp;</TD>\r
95 </TR>\r
96 <TR BGCOLOR="white" CLASS="TableRowColor">\r
97 <TD><A HREF="#compbio.data.sequence"><B>compbio.data.sequence</B></A></TD>\r
98 <TD>A data model for multiple sequence alignment web services and utility methods
99  that work on the objects of this model.&nbsp;</TD>\r
100 </TR>\r
101 <TR BGCOLOR="white" CLASS="TableRowColor">\r
102 <TD><A HREF="#compbio.metadata"><B>compbio.metadata</B></A></TD>\r
103 <TD>A meta-data model for multiple sequence alignment web services 
104  Classes in this package have no dependencies to other sources in the project.&nbsp;</TD>\r
105 </TR>\r
106 </TABLE>\r
107 &nbsp;\r
108 <P>\r
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110 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
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112 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
113 Classes in <A HREF="../../../compbio/data/sequence/package-summary.html">compbio.data.sequence</A> used by <A HREF="../../../compbio/data/msa/package-summary.html">compbio.data.msa</A></FONT></TH>\r
114 </TR>\r
115 <TR BGCOLOR="white" CLASS="TableRowColor">\r
116 <TD><B><A HREF="../../../compbio/data/sequence/class-use/Alignment.html#compbio.data.msa"><B>Alignment</B></A></B>\r
117 \r
118 <BR>\r
119 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Multiple sequence alignment.</TD>\r
120 </TR>\r
121 <TR BGCOLOR="white" CLASS="TableRowColor">\r
122 <TD><B><A HREF="../../../compbio/data/sequence/class-use/FastaSequence.html#compbio.data.msa"><B>FastaSequence</B></A></B>\r
123 \r
124 <BR>\r
125 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;A FASTA formatted sequence.</TD>\r
126 </TR>\r
127 </TABLE>\r
128 &nbsp;\r
129 <P>\r
130 <A NAME="compbio.data.sequence"><!-- --></A>\r
131 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
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135 </TR>\r
136 <TR BGCOLOR="white" CLASS="TableRowColor">\r
137 <TD><B><A HREF="../../../compbio/data/sequence/class-use/Alignment.html#compbio.data.sequence"><B>Alignment</B></A></B>\r
138 \r
139 <BR>\r
140 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Multiple sequence alignment.</TD>\r
141 </TR>\r
142 <TR BGCOLOR="white" CLASS="TableRowColor">\r
143 <TD><B><A HREF="../../../compbio/data/sequence/class-use/AlignmentMetadata.html#compbio.data.sequence"><B>AlignmentMetadata</B></A></B>\r
144 \r
145 <BR>\r
146 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Alignment metadata e.g.</TD>\r
147 </TR>\r
148 <TR BGCOLOR="white" CLASS="TableRowColor">\r
149 <TD><B><A HREF="../../../compbio/data/sequence/class-use/FastaSequence.html#compbio.data.sequence"><B>FastaSequence</B></A></B>\r
150 \r
151 <BR>\r
152 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;A FASTA formatted sequence.</TD>\r
153 </TR>\r
154 <TR BGCOLOR="white" CLASS="TableRowColor">\r
155 <TD><B><A HREF="../../../compbio/data/sequence/class-use/Program.html#compbio.data.sequence"><B>Program</B></A></B>\r
156 \r
157 <BR>\r
158 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;The list of programmes that can produce alignments</TD>\r
159 </TR>\r
160 <TR BGCOLOR="white" CLASS="TableRowColor">\r
161 <TD><B><A HREF="../../../compbio/data/sequence/class-use/UnknownFileFormatException.html#compbio.data.sequence"><B>UnknownFileFormatException</B></A></B>\r
162 \r
163 <BR>\r
164 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
165 </TR>\r
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173 Classes in <A HREF="../../../compbio/data/sequence/package-summary.html">compbio.data.sequence</A> used by <A HREF="../../../compbio/metadata/package-summary.html">compbio.metadata</A></FONT></TH>\r
174 </TR>\r
175 <TR BGCOLOR="white" CLASS="TableRowColor">\r
176 <TD><B><A HREF="../../../compbio/data/sequence/class-use/FastaSequence.html#compbio.metadata"><B>FastaSequence</B></A></B>\r
177 \r
178 <BR>\r
179 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;A FASTA formatted sequence.</TD>\r
180 </TR>\r
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