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5 <!-- Generated by javadoc (build 1.6.0_24) on Wed Dec 07 12:08:24 GMT 2011 -->
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7 Uses of Class compbio.metadata.Preset
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10 <META NAME="date" CONTENT="2011-12-07">
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18 parent.document.title="Uses of Class compbio.metadata.Preset";
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40 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A> </TD>
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41 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A> </TD>
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42 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../compbio/metadata/Preset.html" title="class in compbio.metadata"><FONT CLASS="NavBarFont1"><B>Class</B></FONT></A> </TD>
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62 <A HREF="Preset.html" target="_top"><B>NO FRAMES</B></A>
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63 <SCRIPT type="text/javascript">
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66 document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>');
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84 <B>Uses of Class<br>compbio.metadata.Preset</B></H2>
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87 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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88 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
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89 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
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90 Packages that use <A HREF="../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</A></FONT></TH>
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92 <TR BGCOLOR="white" CLASS="TableRowColor">
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93 <TD><A HREF="#compbio.data.msa"><B>compbio.data.msa</B></A></TD>
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94 <TD>Web Service interfaces for JAva Bioinformatics Analysis Web Services. </TD>
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96 <TR BGCOLOR="white" CLASS="TableRowColor">
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97 <TD><A HREF="#compbio.data.msa.jaxws"><B>compbio.data.msa.jaxws</B></A></TD>
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98 <TD> </TD>
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100 <TR BGCOLOR="white" CLASS="TableRowColor">
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101 <TD><A HREF="#compbio.metadata"><B>compbio.metadata</B></A></TD>
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102 <TD>A meta-data model for multiple sequence alignment web services
103 Classes in this package have no dependencies to other sources in the project. </TD>
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108 <A NAME="compbio.data.msa"><!-- --></A>
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109 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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110 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
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111 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
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112 Uses of <A HREF="../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</A> in <A HREF="../../../compbio/data/msa/package-summary.html">compbio.data.msa</A></FONT></TH>
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118 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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119 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">
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120 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/data/msa/package-summary.html">compbio.data.msa</A> with parameters of type <A HREF="../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</A></FONT></TH>
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122 <TR BGCOLOR="white" CLASS="TableRowColor">
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123 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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124 <CODE> java.lang.String</CODE></FONT></TD>
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125 <TD><CODE><B>MsaWS.</B><B><A HREF="../../../compbio/data/msa/MsaWS.html#presetAlign(java.util.List, compbio.metadata.Preset)">presetAlign</A></B>(java.util.List<<A HREF="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</A>> sequences,
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126 <A HREF="../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</A><<A HREF="../../../compbio/data/msa/MsaWS.html" title="type parameter in MsaWS">T</A>> preset)</CODE>
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129 Align a list of sequences with preset.</TD>
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131 <TR BGCOLOR="white" CLASS="TableRowColor">
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132 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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133 <CODE> java.lang.String</CODE></FONT></TD>
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134 <TD><CODE><B>SequenceAnnotation.</B><B><A HREF="../../../compbio/data/msa/SequenceAnnotation.html#presetAnalize(java.util.List, compbio.metadata.Preset)">presetAnalize</A></B>(java.util.List<<A HREF="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</A>> sequences,
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135 <A HREF="../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</A><<A HREF="../../../compbio/data/msa/SequenceAnnotation.html" title="type parameter in SequenceAnnotation">T</A>> preset)</CODE>
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138 Analyse the sequences according to the preset settings.</TD>
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143 <A NAME="compbio.data.msa.jaxws"><!-- --></A>
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144 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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145 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
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146 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
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147 Uses of <A HREF="../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</A> in <A HREF="../../../compbio/data/msa/jaxws/package-summary.html">compbio.data.msa.jaxws</A></FONT></TH>
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153 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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154 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">
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155 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/data/msa/jaxws/package-summary.html">compbio.data.msa.jaxws</A> that return <A HREF="../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</A></FONT></TH>
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157 <TR BGCOLOR="white" CLASS="TableRowColor">
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158 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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159 <CODE> <A HREF="../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</A></CODE></FONT></TD>
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160 <TD><CODE><B>PresetAnalize.</B><B><A HREF="../../../compbio/data/msa/jaxws/PresetAnalize.html#getPreset()">getPreset</A></B>()</CODE>
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163 </TD>
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165 <TR BGCOLOR="white" CLASS="TableRowColor">
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166 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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167 <CODE> <A HREF="../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</A></CODE></FONT></TD>
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168 <TD><CODE><B>PresetAlign.</B><B><A HREF="../../../compbio/data/msa/jaxws/PresetAlign.html#getPreset()">getPreset</A></B>()</CODE>
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171 </TD>
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177 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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178 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">
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179 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/data/msa/jaxws/package-summary.html">compbio.data.msa.jaxws</A> with parameters of type <A HREF="../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</A></FONT></TH>
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181 <TR BGCOLOR="white" CLASS="TableRowColor">
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182 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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183 <CODE> void</CODE></FONT></TD>
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184 <TD><CODE><B>PresetAnalize.</B><B><A HREF="../../../compbio/data/msa/jaxws/PresetAnalize.html#setPreset(compbio.metadata.Preset)">setPreset</A></B>(<A HREF="../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</A> preset)</CODE>
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187 </TD>
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189 <TR BGCOLOR="white" CLASS="TableRowColor">
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190 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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191 <CODE> void</CODE></FONT></TD>
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192 <TD><CODE><B>PresetAlign.</B><B><A HREF="../../../compbio/data/msa/jaxws/PresetAlign.html#setPreset(compbio.metadata.Preset)">setPreset</A></B>(<A HREF="../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</A> preset)</CODE>
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195 </TD>
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200 <A NAME="compbio.metadata"><!-- --></A>
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201 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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202 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
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203 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
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204 Uses of <A HREF="../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</A> in <A HREF="../../../compbio/metadata/package-summary.html">compbio.metadata</A></FONT></TH>
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210 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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211 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">
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212 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/metadata/package-summary.html">compbio.metadata</A> that return <A HREF="../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</A></FONT></TH>
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214 <TR BGCOLOR="white" CLASS="TableRowColor">
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215 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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216 <CODE> <A HREF="../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</A><<A HREF="../../../compbio/metadata/PresetManager.html" title="type parameter in PresetManager">T</A>></CODE></FONT></TD>
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217 <TD><CODE><B>PresetManager.</B><B><A HREF="../../../compbio/metadata/PresetManager.html#getPresetByName(java.lang.String)">getPresetByName</A></B>(java.lang.String presetName)</CODE>
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220 </TD>
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226 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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227 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">
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228 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/metadata/package-summary.html">compbio.metadata</A> that return types with arguments of type <A HREF="../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</A></FONT></TH>
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230 <TR BGCOLOR="white" CLASS="TableRowColor">
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231 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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232 <CODE> java.util.List<<A HREF="../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</A><<A HREF="../../../compbio/metadata/PresetManager.html" title="type parameter in PresetManager">T</A>>></CODE></FONT></TD>
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233 <TD><CODE><B>PresetManager.</B><B><A HREF="../../../compbio/metadata/PresetManager.html#getPresets()">getPresets</A></B>()</CODE>
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236 </TD>
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242 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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243 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">
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244 <TH ALIGN="left" COLSPAN="2">Method parameters in <A HREF="../../../compbio/metadata/package-summary.html">compbio.metadata</A> with type arguments of type <A HREF="../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</A></FONT></TH>
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246 <TR BGCOLOR="white" CLASS="TableRowColor">
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247 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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248 <CODE> void</CODE></FONT></TD>
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249 <TD><CODE><B>PresetManager.</B><B><A HREF="../../../compbio/metadata/PresetManager.html#setPresets(java.util.List)">setPresets</A></B>(java.util.List<<A HREF="../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</A><<A HREF="../../../compbio/metadata/PresetManager.html" title="type parameter in PresetManager">T</A>>> presets)</CODE>
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252 </TD>
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260 <!-- ======= START OF BOTTOM NAVBAR ====== -->
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261 <A NAME="navbar_bottom"><!-- --></A>
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262 <A HREF="#skip-navbar_bottom" title="Skip navigation links"></A>
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266 <A NAME="navbar_bottom_firstrow"><!-- --></A>
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267 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">
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268 <TR ALIGN="center" VALIGN="top">
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269 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A> </TD>
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270 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A> </TD>
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271 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../compbio/metadata/Preset.html" title="class in compbio.metadata"><FONT CLASS="NavBarFont1"><B>Class</B></FONT></A> </TD>
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272 <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> <FONT CLASS="NavBarFont1Rev"><B>Use</B></FONT> </TD>
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280 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
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286 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">
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288 NEXT</FONT></TD>
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289 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">
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290 <A HREF="../../../index.html?compbio/metadata/\class-usePreset.html" target="_top"><B>FRAMES</B></A>
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291 <A HREF="Preset.html" target="_top"><B>NO FRAMES</B></A>
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292 <SCRIPT type="text/javascript">
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295 document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>');
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300 <A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>
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