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7 Constant Field Values
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84 Constant Field Values</H1>
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86 <HR SIZE="4" NOSHADE>
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88 <LI><A HREF="#compbio.data">compbio.data.*</A>
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89 <LI><A HREF="#compbio.metadata">compbio.metadata.*</A>
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90 <LI><A HREF="#compbio.ws">compbio.ws.*</A>
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93 <A NAME="compbio.data"><!-- --></A>
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94 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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95 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
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96 <TH ALIGN="left"><FONT SIZE="+2">
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97 compbio.data.*</FONT></TH>
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103 <TABLE BORDER="1" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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104 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">
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105 <TH ALIGN="left" COLSPAN="3">compbio.data.msa.<A HREF="compbio/data/msa/Category.html" title="class in compbio.data.msa">Category</A></TH>
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107 <TR BGCOLOR="white" CLASS="TableRowColor">
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108 <A NAME="compbio.data.msa.Category.CATEGORY_ALIGNMENT"><!-- --></A><TD ALIGN="right"><FONT SIZE="-1">
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109 <CODE>public static final java.lang.String</CODE></FONT></TD>
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110 <TD ALIGN="left"><CODE><A HREF="compbio/data/msa/Category.html#CATEGORY_ALIGNMENT">CATEGORY_ALIGNMENT</A></CODE></TD>
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111 <TD ALIGN="right"><CODE>"Alignment"</CODE></TD>
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113 <TR BGCOLOR="white" CLASS="TableRowColor">
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114 <A NAME="compbio.data.msa.Category.CATEGORY_CONSERVATION"><!-- --></A><TD ALIGN="right"><FONT SIZE="-1">
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115 <CODE>public static final java.lang.String</CODE></FONT></TD>
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116 <TD ALIGN="left"><CODE><A HREF="compbio/data/msa/Category.html#CATEGORY_CONSERVATION">CATEGORY_CONSERVATION</A></CODE></TD>
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117 <TD ALIGN="right"><CODE>"Conservation"</CODE></TD>
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119 <TR BGCOLOR="white" CLASS="TableRowColor">
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120 <A NAME="compbio.data.msa.Category.CATEGORY_DISORDER"><!-- --></A><TD ALIGN="right"><FONT SIZE="-1">
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121 <CODE>public static final java.lang.String</CODE></FONT></TD>
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122 <TD ALIGN="left"><CODE><A HREF="compbio/data/msa/Category.html#CATEGORY_DISORDER">CATEGORY_DISORDER</A></CODE></TD>
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123 <TD ALIGN="right"><CODE>"Protein Disorder"</CODE></TD>
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133 <TABLE BORDER="1" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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134 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">
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135 <TH ALIGN="left" COLSPAN="3">compbio.data.msa.<A HREF="compbio/data/msa/JABAService.html" title="interface in compbio.data.msa">JABAService</A></TH>
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137 <TR BGCOLOR="white" CLASS="TableRowColor">
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138 <A NAME="compbio.data.msa.JABAService.SERVICE_NAMESPACE"><!-- --></A><TD ALIGN="right"><FONT SIZE="-1">
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139 <CODE>public static final java.lang.String</CODE></FONT></TD>
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140 <TD ALIGN="left"><CODE><A HREF="compbio/data/msa/JABAService.html#SERVICE_NAMESPACE">SERVICE_NAMESPACE</A></CODE></TD>
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141 <TD ALIGN="right"><CODE>"http://msa.data.compbio/01/01/2010/"</CODE></TD>
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143 <TR BGCOLOR="white" CLASS="TableRowColor">
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144 <A NAME="compbio.data.msa.JABAService.V2_SERVICE_NAMESPACE"><!-- --></A><TD ALIGN="right"><FONT SIZE="-1">
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145 <CODE>public static final java.lang.String</CODE></FONT></TD>
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146 <TD ALIGN="left"><CODE><A HREF="compbio/data/msa/JABAService.html#V2_SERVICE_NAMESPACE">V2_SERVICE_NAMESPACE</A></CODE></TD>
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147 <TD ALIGN="right"><CODE>"http://msa.data.compbio/01/12/2010/"</CODE></TD>
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157 <TABLE BORDER="1" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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158 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">
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159 <TH ALIGN="left" COLSPAN="3">compbio.data.sequence.<A HREF="compbio/data/sequence/ClustalAlignmentUtil.html" title="class in compbio.data.sequence">ClustalAlignmentUtil</A></TH>
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161 <TR BGCOLOR="white" CLASS="TableRowColor">
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162 <A NAME="compbio.data.sequence.ClustalAlignmentUtil.gapchar"><!-- --></A><TD ALIGN="right"><FONT SIZE="-1">
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163 <CODE>public static final char</CODE></FONT></TD>
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164 <TD ALIGN="left"><CODE><A HREF="compbio/data/sequence/ClustalAlignmentUtil.html#gapchar">gapchar</A></CODE></TD>
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165 <TD ALIGN="right"><CODE>45</CODE></TD>
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175 <TABLE BORDER="1" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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176 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">
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177 <TH ALIGN="left" COLSPAN="3">compbio.data.sequence.<A HREF="compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</A></TH>
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179 <TR BGCOLOR="white" CLASS="TableRowColor">
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180 <A NAME="compbio.data.sequence.ScoreManager.SINGLE_ENTRY_KEY"><!-- --></A><TD ALIGN="right"><FONT SIZE="-1">
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181 <CODE>public static final java.lang.String</CODE></FONT></TD>
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182 <TD ALIGN="left"><CODE><A HREF="compbio/data/sequence/ScoreManager.html#SINGLE_ENTRY_KEY">SINGLE_ENTRY_KEY</A></CODE></TD>
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183 <TD ALIGN="right"><CODE>"Alignment"</CODE></TD>
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193 <TABLE BORDER="1" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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194 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">
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195 <TH ALIGN="left" COLSPAN="3">compbio.data.sequence.<A HREF="compbio/data/sequence/SMERFSConstraints.html" title="enum in compbio.data.sequence">SMERFSConstraints</A></TH>
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197 <TR BGCOLOR="white" CLASS="TableRowColor">
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198 <A NAME="compbio.data.sequence.SMERFSConstraints.DEFAULT_GAP_THRESHOLD"><!-- --></A><TD ALIGN="right"><FONT SIZE="-1">
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199 <CODE>public static final double</CODE></FONT></TD>
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200 <TD ALIGN="left"><CODE><A HREF="compbio/data/sequence/SMERFSConstraints.html#DEFAULT_GAP_THRESHOLD">DEFAULT_GAP_THRESHOLD</A></CODE></TD>
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201 <TD ALIGN="right"><CODE>0.1</CODE></TD>
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203 <TR BGCOLOR="white" CLASS="TableRowColor">
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204 <A NAME="compbio.data.sequence.SMERFSConstraints.DEFAULT_WINDOW_SIZE"><!-- --></A><TD ALIGN="right"><FONT SIZE="-1">
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205 <CODE>public static final int</CODE></FONT></TD>
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206 <TD ALIGN="left"><CODE><A HREF="compbio/data/sequence/SMERFSConstraints.html#DEFAULT_WINDOW_SIZE">DEFAULT_WINDOW_SIZE</A></CODE></TD>
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207 <TD ALIGN="right"><CODE>7</CODE></TD>
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216 <A NAME="compbio.metadata"><!-- --></A>
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217 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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218 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
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219 <TH ALIGN="left"><FONT SIZE="+2">
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220 compbio.metadata.*</FONT></TH>
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226 <TABLE BORDER="1" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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228 <TH ALIGN="left" COLSPAN="3">compbio.metadata.<A HREF="compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</A><<A HREF="compbio/metadata/PresetManager.html" title="type parameter in PresetManager">T</A>></TH>
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230 <TR BGCOLOR="white" CLASS="TableRowColor">
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231 <A NAME="compbio.metadata.PresetManager.LOCAL_ENGINE_LIMIT_PRESET"><!-- --></A><TD ALIGN="right"><FONT SIZE="-1">
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232 <CODE>public static final java.lang.String</CODE></FONT></TD>
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233 <TD ALIGN="left"><CODE><A HREF="compbio/metadata/PresetManager.html#LOCAL_ENGINE_LIMIT_PRESET">LOCAL_ENGINE_LIMIT_PRESET</A></CODE></TD>
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234 <TD ALIGN="right"><CODE>"# LocalEngineExecutionLimit #"</CODE></TD>
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243 <A NAME="compbio.ws"><!-- --></A>
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244 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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245 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
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246 <TH ALIGN="left"><FONT SIZE="+2">
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247 compbio.ws.*</FONT></TH>
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253 <TABLE BORDER="1" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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254 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">
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255 <TH ALIGN="left" COLSPAN="3">compbio.ws.client.<A HREF="compbio/ws/client/WSTester.html" title="class in compbio.ws.client">WSTester</A></TH>
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257 <TR BGCOLOR="white" CLASS="TableRowColor">
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258 <A NAME="compbio.ws.client.WSTester.fastaAlignment"><!-- --></A><TD ALIGN="right"><FONT SIZE="-1">
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259 <CODE>public static final java.lang.String</CODE></FONT></TD>
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260 <TD ALIGN="left"><CODE><A HREF="compbio/ws/client/WSTester.html#fastaAlignment">fastaAlignment</A></CODE></TD>
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261 <TD ALIGN="right"><CODE>">Foo\nMTADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAV--------\n>Bar\nASDAAPEH------------PGIALWLHALE-DAGQAEAAA---AYTRAHQLLPEEPYITAQLLNAVA\n"</CODE></TD>
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263 <TR BGCOLOR="white" CLASS="TableRowColor">
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264 <A NAME="compbio.ws.client.WSTester.fastaInput"><!-- --></A><TD ALIGN="right"><FONT SIZE="-1">
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265 <CODE>public static final java.lang.String</CODE></FONT></TD>
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266 <TD ALIGN="left"><CODE><A HREF="compbio/ws/client/WSTester.html#fastaInput">fastaInput</A></CODE></TD>
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267 <TD ALIGN="right"><CODE>">Foo\nMTADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAV\n>Bar\nASDAAPEHPGIALWLHALEDAGQAEAAAAYTRAHQLLPEEPYITAQLLNAVA\n"</CODE></TD>
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