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82 <A NAME="_D_"><!-- --></A><H2>
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85 <DT><A HREF="../compbio/data/sequence/SequenceUtil.html#deepCleanSequence(java.lang.String)"><B>deepCleanSequence(String)</B></A> -
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86 Static method in class compbio.data.sequence.<A HREF="../compbio/data/sequence/SequenceUtil.html" title="class in compbio.data.sequence">SequenceUtil</A>
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87 <DD>Removes all special characters and digits as well as whitespace chars
89 <DT><A HREF="../compbio/data/sequence/SMERFSConstraints.html#DEFAULT_COLUMN_SCORE"><B>DEFAULT_COLUMN_SCORE</B></A> -
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90 Static variable in enum compbio.data.sequence.<A HREF="../compbio/data/sequence/SMERFSConstraints.html" title="enum in compbio.data.sequence">SMERFSConstraints</A>
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91 <DD>Default column scoring schema
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92 <DT><A HREF="../compbio/data/sequence/SMERFSConstraints.html#DEFAULT_GAP_THRESHOLD"><B>DEFAULT_GAP_THRESHOLD</B></A> -
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93 Static variable in enum compbio.data.sequence.<A HREF="../compbio/data/sequence/SMERFSConstraints.html" title="enum in compbio.data.sequence">SMERFSConstraints</A>
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94 <DD>Default gap threshold value for SMERFS algorithm
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95 <DT><A HREF="../compbio/data/sequence/SMERFSConstraints.html#DEFAULT_WINDOW_SIZE"><B>DEFAULT_WINDOW_SIZE</B></A> -
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96 Static variable in enum compbio.data.sequence.<A HREF="../compbio/data/sequence/SMERFSConstraints.html" title="enum in compbio.data.sequence">SMERFSConstraints</A>
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97 <DD>Default window size value for SMERFS algorithm
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98 <DT><A HREF="../compbio/data/sequence/SequenceUtil.html#DIGIT"><B>DIGIT</B></A> -
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99 Static variable in class compbio.data.sequence.<A HREF="../compbio/data/sequence/SequenceUtil.html" title="class in compbio.data.sequence">SequenceUtil</A>
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101 <DT><A HREF="../compbio/data/sequence/DisemblResultAnnot.html" title="enum in compbio.data.sequence"><B>DisemblResultAnnot</B></A> - Enum in <A HREF="../compbio/data/sequence/package-summary.html">compbio.data.sequence</A><DD> </DL>
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