Refactored client class to accomodate new WS interface and reduce the complexity
[jabaws.git] / website / dm_javadoc / serialized-form.html
1 <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">\r
2 <!--NewPage-->\r
3 <HTML>\r
4 <HEAD>\r
5 <!-- Generated by javadoc (build 1.6.0_21) on Wed Nov 24 12:17:18 GMT 2010 -->\r
6 <TITLE>\r
7 Serialized Form\r
8 </TITLE>\r
9 \r
10 <META NAME="date" CONTENT="2010-11-24">\r
11 \r
12 <LINK REL ="stylesheet" TYPE="text/css" HREF="stylesheet.css" TITLE="Style">\r
13 \r
14 <SCRIPT type="text/javascript">\r
15 function windowTitle()\r
16 {\r
17     if (location.href.indexOf('is-external=true') == -1) {\r
18         parent.document.title="Serialized Form";\r
19     }\r
20 }\r
21 </SCRIPT>\r
22 <NOSCRIPT>\r
23 </NOSCRIPT>\r
24 \r
25 </HEAD>\r
26 \r
27 <BODY BGCOLOR="white" onload="windowTitle();">\r
28 <HR>\r
29 \r
30 \r
31 <!-- ========= START OF TOP NAVBAR ======= -->\r
32 <A NAME="navbar_top"><!-- --></A>\r
33 <A HREF="#skip-navbar_top" title="Skip navigation links"></A>\r
34 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">\r
35 <TR>\r
36 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">\r
37 <A NAME="navbar_top_firstrow"><!-- --></A>\r
38 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
39   <TR ALIGN="center" VALIGN="top">\r
40   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
41   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <FONT CLASS="NavBarFont1">Package</FONT>&nbsp;</TD>\r
42   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <FONT CLASS="NavBarFont1">Class</FONT>&nbsp;</TD>\r
43   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <FONT CLASS="NavBarFont1">Use</FONT>&nbsp;</TD>\r
44   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="overview-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>\r
45   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>\r
46   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A>&nbsp;</TD>\r
47   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD>\r
48   </TR>\r
49 </TABLE>\r
50 </TD>\r
51 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
52 </EM>\r
53 </TD>\r
54 </TR>\r
55 \r
56 <TR>\r
57 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
58 &nbsp;PREV&nbsp;\r
59 &nbsp;NEXT</FONT></TD>\r
60 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
61   <A HREF="index.html?serialized-form.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
62 &nbsp;<A HREF="serialized-form.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;\r
63 &nbsp;<SCRIPT type="text/javascript">\r
64   <!--\r
65   if(window==top) {\r
66     document.writeln('<A HREF="allclasses-noframe.html"><B>All Classes</B></A>');\r
67   }\r
68   //-->\r
69 </SCRIPT>\r
70 <NOSCRIPT>\r
71   <A HREF="allclasses-noframe.html"><B>All Classes</B></A>\r
72 </NOSCRIPT>\r
73 \r
74 \r
75 </FONT></TD>\r
76 </TR>\r
77 </TABLE>\r
78 <A NAME="skip-navbar_top"></A>\r
79 <!-- ========= END OF TOP NAVBAR ========= -->\r
80 \r
81 <HR>\r
82 <CENTER>\r
83 <H1>\r
84 Serialized Form</H1>\r
85 </CENTER>\r
86 <HR SIZE="4" NOSHADE>\r
87 \r
88 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
89 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
90 <TH ALIGN="center"><FONT SIZE="+2">\r
91 <B>Package</B> <B>compbio.data.sequence</B></FONT></TH>\r
92 </TR>\r
93 </TABLE>\r
94 \r
95 <P>\r
96 <A NAME="compbio.data.sequence.UnknownFileFormatException"><!-- --></A>\r
97 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
98 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
99 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
100 <B>Class <A HREF="compbio/data/sequence/UnknownFileFormatException.html" title="class in compbio.data.sequence">compbio.data.sequence.UnknownFileFormatException</A> extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Exception.html?is-external=true" title="class or interface in java.lang">Exception</A> implements Serializable</B></FONT></TH>\r
101 </TR>\r
102 </TABLE>\r
103 \r
104 <P>\r
105 <B>serialVersionUID:&nbsp;</B>196629543695636854L\r
106 \r
107 <P>\r
108 <A NAME="serializedForm"><!-- --></A>\r
109 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
110 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
111 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
112 <B>Serialized Fields</B></FONT></TH>\r
113 </TR>\r
114 </TABLE>\r
115 \r
116 <H3>\r
117 file</H3>\r
118 <PRE>\r
119 <A HREF="http://java.sun.com/javase/6/docs/api/java/io/File.html?is-external=true" title="class or interface in java.io">File</A> <B>file</B></PRE>\r
120 <DL>\r
121 <DL>\r
122 </DL>\r
123 </DL>\r
124 <HR SIZE="4" NOSHADE>\r
125 \r
126 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
127 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
128 <TH ALIGN="center"><FONT SIZE="+2">\r
129 <B>Package</B> <B>compbio.metadata</B></FONT></TH>\r
130 </TR>\r
131 </TABLE>\r
132 \r
133 <P>\r
134 <A NAME="compbio.metadata.JobExecutionException"><!-- --></A>\r
135 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
136 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
137 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
138 <B>Class <A HREF="compbio/metadata/JobExecutionException.html" title="class in compbio.metadata">compbio.metadata.JobExecutionException</A> extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Exception.html?is-external=true" title="class or interface in java.lang">Exception</A> implements Serializable</B></FONT></TH>\r
139 </TR>\r
140 </TABLE>\r
141 \r
142 <P>\r
143 <B>serialVersionUID:&nbsp;</B>-5477751361755778769L\r
144 \r
145 <P>\r
146 \r
147 <P>\r
148 <A NAME="compbio.metadata.JobSubmissionException"><!-- --></A>\r
149 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
150 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
151 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
152 <B>Class <A HREF="compbio/metadata/JobSubmissionException.html" title="class in compbio.metadata">compbio.metadata.JobSubmissionException</A> extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Exception.html?is-external=true" title="class or interface in java.lang">Exception</A> implements Serializable</B></FONT></TH>\r
153 </TR>\r
154 </TABLE>\r
155 \r
156 <P>\r
157 <B>serialVersionUID:&nbsp;</B>607986894357895572L\r
158 \r
159 <P>\r
160 \r
161 <P>\r
162 <A NAME="compbio.metadata.LimitExceededException"><!-- --></A>\r
163 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
164 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
165 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
166 <B>Class <A HREF="compbio/metadata/LimitExceededException.html" title="class in compbio.metadata">compbio.metadata.LimitExceededException</A> extends <A HREF="compbio/metadata/JobSubmissionException.html" title="class in compbio.metadata">JobSubmissionException</A> implements Serializable</B></FONT></TH>\r
167 </TR>\r
168 </TABLE>\r
169 \r
170 <P>\r
171 <B>serialVersionUID:&nbsp;</B>15066952180013505L\r
172 \r
173 <P>\r
174 <A NAME="serializedForm"><!-- --></A>\r
175 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
176 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
177 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
178 <B>Serialized Fields</B></FONT></TH>\r
179 </TR>\r
180 </TABLE>\r
181 \r
182 <H3>\r
183 numberOfSequencesAllowed</H3>\r
184 <PRE>\r
185 int <B>numberOfSequencesAllowed</B></PRE>\r
186 <DL>\r
187 <DL>\r
188 </DL>\r
189 </DL>\r
190 <HR>\r
191 <H3>\r
192 actualNumberofSequences</H3>\r
193 <PRE>\r
194 int <B>actualNumberofSequences</B></PRE>\r
195 <DL>\r
196 <DL>\r
197 </DL>\r
198 </DL>\r
199 <HR>\r
200 <H3>\r
201 aSequenceLenghtAllowed</H3>\r
202 <PRE>\r
203 int <B>aSequenceLenghtAllowed</B></PRE>\r
204 <DL>\r
205 <DL>\r
206 </DL>\r
207 </DL>\r
208 <HR>\r
209 <H3>\r
210 aSequenceLenghtActual</H3>\r
211 <PRE>\r
212 int <B>aSequenceLenghtActual</B></PRE>\r
213 <DL>\r
214 <DL>\r
215 </DL>\r
216 </DL>\r
217 \r
218 <P>\r
219 <A NAME="compbio.metadata.ResultNotAvailableException"><!-- --></A>\r
220 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
221 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
222 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
223 <B>Class <A HREF="compbio/metadata/ResultNotAvailableException.html" title="class in compbio.metadata">compbio.metadata.ResultNotAvailableException</A> extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Exception.html?is-external=true" title="class or interface in java.lang">Exception</A> implements Serializable</B></FONT></TH>\r
224 </TR>\r
225 </TABLE>\r
226 \r
227 <P>\r
228 <B>serialVersionUID:&nbsp;</B>-5475613614578761L\r
229 \r
230 <P>\r
231 \r
232 <P>\r
233 <A NAME="compbio.metadata.UnsupportedRuntimeException"><!-- --></A>\r
234 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
235 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
236 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
237 <B>Class <A HREF="compbio/metadata/UnsupportedRuntimeException.html" title="class in compbio.metadata">compbio.metadata.UnsupportedRuntimeException</A> extends <A HREF="compbio/metadata/JobSubmissionException.html" title="class in compbio.metadata">JobSubmissionException</A> implements Serializable</B></FONT></TH>\r
238 </TR>\r
239 </TABLE>\r
240 \r
241 <P>\r
242 <B>serialVersionUID:&nbsp;</B>-86624836785110293L\r
243 \r
244 <P>\r
245 \r
246 <P>\r
247 <A NAME="compbio.metadata.WrongParameterException"><!-- --></A>\r
248 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
249 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
250 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
251 <B>Class <A HREF="compbio/metadata/WrongParameterException.html" title="class in compbio.metadata">compbio.metadata.WrongParameterException</A> extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Exception.html?is-external=true" title="class or interface in java.lang">Exception</A> implements Serializable</B></FONT></TH>\r
252 </TR>\r
253 </TABLE>\r
254 \r
255 <P>\r
256 <B>serialVersionUID:&nbsp;</B>-547775417557345769L\r
257 \r
258 <P>\r
259 \r
260 <P>\r
261 <HR>\r
262 \r
263 \r
264 <!-- ======= START OF BOTTOM NAVBAR ====== -->\r
265 <A NAME="navbar_bottom"><!-- --></A>\r
266 <A HREF="#skip-navbar_bottom" title="Skip navigation links"></A>\r
267 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">\r
268 <TR>\r
269 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">\r
270 <A NAME="navbar_bottom_firstrow"><!-- --></A>\r
271 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
272   <TR ALIGN="center" VALIGN="top">\r
273   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
274   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <FONT CLASS="NavBarFont1">Package</FONT>&nbsp;</TD>\r
275   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <FONT CLASS="NavBarFont1">Class</FONT>&nbsp;</TD>\r
276   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <FONT CLASS="NavBarFont1">Use</FONT>&nbsp;</TD>\r
277   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="overview-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>\r
278   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>\r
279   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A>&nbsp;</TD>\r
280   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD>\r
281   </TR>\r
282 </TABLE>\r
283 </TD>\r
284 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
285 </EM>\r
286 </TD>\r
287 </TR>\r
288 \r
289 <TR>\r
290 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
291 &nbsp;PREV&nbsp;\r
292 &nbsp;NEXT</FONT></TD>\r
293 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
294   <A HREF="index.html?serialized-form.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
295 &nbsp;<A HREF="serialized-form.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;\r
296 &nbsp;<SCRIPT type="text/javascript">\r
297   <!--\r
298   if(window==top) {\r
299     document.writeln('<A HREF="allclasses-noframe.html"><B>All Classes</B></A>');\r
300   }\r
301   //-->\r
302 </SCRIPT>\r
303 <NOSCRIPT>\r
304   <A HREF="allclasses-noframe.html"><B>All Classes</B></A>\r
305 </NOSCRIPT>\r
306 \r
307 \r
308 </FONT></TD>\r
309 </TR>\r
310 </TABLE>\r
311 <A NAME="skip-navbar_bottom"></A>\r
312 <!-- ======== END OF BOTTOM NAVBAR ======= -->\r
313 \r
314 <HR>\r
315 \r
316 </BODY>\r
317 </HTML>\r