website/docs/full_javadoc/compbio/data/msa/jaxws/PresetFold.html

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  96 <h2 title="Class PresetFold" class="title">Class PresetFold</h2>
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 111 <br>
 112 <pre>public class <span class="typeNameLabel">PresetFold</span>
 113 extends java.lang.Object</pre>
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 130 <th class="colLast" scope="col">Field and Description</th>
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 132 <tr class="altColor">
 133 <td class="colFirst"><code>private <a href="../../../../compbio/data/sequence/Alignment.html" title="class in compbio.data.sequence">Alignment</a></code></td>
 134 <td class="colLast"><code><span class="memberNameLink"><a href="../../../../compbio/data/msa/jaxws/PresetFold.html#alignment">alignment</a></span></code>&nbsp;</td>
 135 </tr>
 136 <tr class="rowColor">
 137 <td class="colFirst"><code>private <a href="../../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</a></code></td>
 138 <td class="colLast"><code><span class="memberNameLink"><a href="../../../../compbio/data/msa/jaxws/PresetFold.html#preset">preset</a></span></code>&nbsp;</td>
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 155 <td class="colOne"><code><span class="memberNameLink"><a href="../../../../compbio/data/msa/jaxws/PresetFold.html#PresetFold--">PresetFold</a></span>()</code>&nbsp;</td>
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 173 <td class="colFirst"><code><a href="../../../../compbio/data/sequence/Alignment.html" title="class in compbio.data.sequence">Alignment</a></code></td>
 174 <td class="colLast"><code><span class="memberNameLink"><a href="../../../../compbio/data/msa/jaxws/PresetFold.html#getAlignment--">getAlignment</a></span>()</code>&nbsp;</td>
 175 </tr>
 176 <tr id="i1" class="rowColor">
 177 <td class="colFirst"><code><a href="../../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</a></code></td>
 178 <td class="colLast"><code><span class="memberNameLink"><a href="../../../../compbio/data/msa/jaxws/PresetFold.html#getPreset--">getPreset</a></span>()</code>&nbsp;</td>
 179 </tr>
 180 <tr id="i2" class="altColor">
 181 <td class="colFirst"><code>void</code></td>
 182 <td class="colLast"><code><span class="memberNameLink"><a href="../../../../compbio/data/msa/jaxws/PresetFold.html#setAlignment-compbio.data.sequence.Alignment-">setAlignment</a></span>(<a href="../../../../compbio/data/sequence/Alignment.html" title="class in compbio.data.sequence">Alignment</a>&nbsp;alignment)</code>&nbsp;</td>
 183 </tr>
 184 <tr id="i3" class="rowColor">
 185 <td class="colFirst"><code>void</code></td>
 186 <td class="colLast"><code><span class="memberNameLink"><a href="../../../../compbio/data/msa/jaxws/PresetFold.html#setPreset-compbio.metadata.Preset-">setPreset</a></span>(<a href="../../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</a>&nbsp;preset)</code>&nbsp;</td>
 187 </tr>
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 191 <!--   -->
 192 </a>
 193 <h3>Methods inherited from class&nbsp;java.lang.Object</h3>
 194 <code>clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</code></li>
 195 </ul>
 196 </li>
 197 </ul>
 198 </li>
 199 </ul>
 200 </div>
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 204 <!-- ============ FIELD DETAIL =========== -->
 205 <ul class="blockList">
 206 <li class="blockList"><a name="field.detail">
 207 <!--   -->
 208 </a>
 209 <h3>Field Detail</h3>
 210 <a name="alignment">
 211 <!--   -->
 212 </a>
 213 <ul class="blockList">
 214 <li class="blockList">
 215 <h4>alignment</h4>
 216 <pre>private&nbsp;<a href="../../../../compbio/data/sequence/Alignment.html" title="class in compbio.data.sequence">Alignment</a> alignment</pre>
 217 </li>
 218 </ul>
 219 <a name="preset">
 220 <!--   -->
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 222 <ul class="blockListLast">
 223 <li class="blockList">
 224 <h4>preset</h4>
 225 <pre>private&nbsp;<a href="../../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</a> preset</pre>
 226 </li>
 227 </ul>
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 237 <!--   -->
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 239 <ul class="blockListLast">
 240 <li class="blockList">
 241 <h4>PresetFold</h4>
 242 <pre>public&nbsp;PresetFold()</pre>
 243 </li>
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 250 <!--   -->
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 252 <h3>Method Detail</h3>
 253 <a name="getAlignment--">
 254 <!--   -->
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 256 <ul class="blockList">
 257 <li class="blockList">
 258 <h4>getAlignment</h4>
 259 <pre>public&nbsp;<a href="../../../../compbio/data/sequence/Alignment.html" title="class in compbio.data.sequence">Alignment</a>&nbsp;getAlignment()</pre>
 260 <dl>
 261 <dt><span class="returnLabel">Returns:</span></dt>
 262 <dd>returns Alignment</dd>
 263 </dl>
 264 </li>
 265 </ul>
 266 <a name="setAlignment-compbio.data.sequence.Alignment-">
 267 <!--   -->
 268 </a>
 269 <ul class="blockList">
 270 <li class="blockList">
 271 <h4>setAlignment</h4>
 272 <pre>public&nbsp;void&nbsp;setAlignment(<a href="../../../../compbio/data/sequence/Alignment.html" title="class in compbio.data.sequence">Alignment</a>&nbsp;alignment)</pre>
 273 <dl>
 274 <dt><span class="paramLabel">Parameters:</span></dt>
 275 <dd><code>alignment</code> - the value for the alignment property</dd>
 276 </dl>
 277 </li>
 278 </ul>
 279 <a name="getPreset--">
 280 <!--   -->
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 282 <ul class="blockList">
 283 <li class="blockList">
 284 <h4>getPreset</h4>
 285 <pre>public&nbsp;<a href="../../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</a>&nbsp;getPreset()</pre>
 286 <dl>
 287 <dt><span class="returnLabel">Returns:</span></dt>
 288 <dd>returns Preset</dd>
 289 </dl>
 290 </li>
 291 </ul>
 292 <a name="setPreset-compbio.metadata.Preset-">
 293 <!--   -->
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 295 <ul class="blockListLast">
 296 <li class="blockList">
 297 <h4>setPreset</h4>
 298 <pre>public&nbsp;void&nbsp;setPreset(<a href="../../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</a>&nbsp;preset)</pre>
 299 <dl>
 300 <dt><span class="paramLabel">Parameters:</span></dt>
 301 <dd><code>preset</code> - the value for the preset property</dd>
 302 </dl>
 303 </li>
 304 </ul>
 305 </li>
 306 </ul>
 307 </li>
 308 </ul>
 309 </div>
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