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76 <li>Summary: </li>
77 <li>Nested | </li>
78 <li><a href="#enum.constant.summary">Enum Constants</a> | </li>
79 <li>Field | </li>
80 <li><a href="#method.summary">Method</a></li>
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83 <li>Detail: </li>
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95 <div class="subTitle">compbio.data.sequence</div>
96 <h2 title="Enum ConservationMethod" class="title">Enum ConservationMethod</h2>
98 <div class="contentContainer">
99 <ul class="inheritance">
100 <li>java.lang.Object</li>
102 <ul class="inheritance">
103 <li>java.lang.Enum<<a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a>></li>
105 <ul class="inheritance">
106 <li>compbio.data.sequence.ConservationMethod</li>
112 <div class="description">
113 <ul class="blockList">
114 <li class="blockList">
116 <dt>All Implemented Interfaces:</dt>
117 <dd>java.io.Serializable, java.lang.Comparable<<a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a>></dd>
121 <pre>public enum <span class="typeNameLabel">ConservationMethod</span>
122 extends java.lang.Enum<<a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a>></pre>
123 <div class="block">Enumeration listing of all the supported methods.</div>
125 <dt><span class="simpleTagLabel">Author:</span></dt>
126 <dd>Agnieszka Golicz & Peter Troshin</dd>
131 <div class="summary">
132 <ul class="blockList">
133 <li class="blockList">
134 <!-- =========== ENUM CONSTANT SUMMARY =========== -->
135 <ul class="blockList">
136 <li class="blockList"><a name="enum.constant.summary">
139 <h3>Enum Constant Summary</h3>
140 <table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Enum Constant Summary table, listing enum constants, and an explanation">
141 <caption><span>Enum Constants</span><span class="tabEnd"> </span></caption>
143 <th class="colOne" scope="col">Enum Constant and Description</th>
145 <tr class="altColor">
146 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#ARMON">ARMON</a></span></code> </td>
148 <tr class="rowColor">
149 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#GERSTEIN">GERSTEIN</a></span></code> </td>
151 <tr class="altColor">
152 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#JORES">JORES</a></span></code> </td>
154 <tr class="rowColor">
155 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#KABAT">KABAT</a></span></code> </td>
157 <tr class="altColor">
158 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#KARLIN">KARLIN</a></span></code> </td>
160 <tr class="rowColor">
161 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#LANDGRAF">LANDGRAF</a></span></code> </td>
163 <tr class="altColor">
164 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#MIRNY">MIRNY</a></span></code> </td>
166 <tr class="rowColor">
167 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#NOT_LANCET">NOT_LANCET</a></span></code> </td>
169 <tr class="altColor">
170 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#SANDER">SANDER</a></span></code> </td>
172 <tr class="rowColor">
173 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#SCHNEIDER">SCHNEIDER</a></span></code> </td>
175 <tr class="altColor">
176 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#SHENKIN">SHENKIN</a></span></code> </td>
178 <tr class="rowColor">
179 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#SMERFS">SMERFS</a></span></code> </td>
181 <tr class="altColor">
182 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#TAYLOR_GAPS">TAYLOR_GAPS</a></span></code> </td>
184 <tr class="rowColor">
185 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#TAYLOR_NO_GAPS">TAYLOR_NO_GAPS</a></span></code> </td>
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188 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#THOMPSON">THOMPSON</a></span></code> </td>
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191 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#VALDAR">VALDAR</a></span></code> </td>
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194 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#WILLIAMSON">WILLIAMSON</a></span></code> </td>
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209 <caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t1" class="tableTab"><span><a href="javascript:show(1);">Static Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption>
211 <th class="colFirst" scope="col">Modifier and Type</th>
212 <th class="colLast" scope="col">Method and Description</th>
214 <tr id="i0" class="altColor">
215 <td class="colFirst"><code>static <a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a></code></td>
216 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#getMethod-java.lang.String-">getMethod</a></span>(java.lang.String meth)</code> </td>
218 <tr id="i1" class="rowColor">
219 <td class="colFirst"><code>static <a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a></code></td>
220 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#valueOf-java.lang.String-">valueOf</a></span>(java.lang.String name)</code>
221 <div class="block">Returns the enum constant of this type with the specified name.</div>
224 <tr id="i2" class="altColor">
225 <td class="colFirst"><code>static <a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a>[]</code></td>
226 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#values--">values</a></span>()</code>
227 <div class="block">Returns an array containing the constants of this enum type, in
228 the order they are declared.</div>
232 <ul class="blockList">
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236 <h3>Methods inherited from class java.lang.Enum</h3>
237 <code>clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf</code></li>
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244 <code>getClass, notify, notifyAll, wait, wait, wait</code></li>
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259 <h3>Enum Constant Detail</h3>
263 <ul class="blockList">
264 <li class="blockList">
266 <pre>public static final <a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a> KABAT</pre>
272 <ul class="blockList">
273 <li class="blockList">
275 <pre>public static final <a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a> JORES</pre>
281 <ul class="blockList">
282 <li class="blockList">
284 <pre>public static final <a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a> SCHNEIDER</pre>
290 <ul class="blockList">
291 <li class="blockList">
293 <pre>public static final <a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a> SHENKIN</pre>
299 <ul class="blockList">
300 <li class="blockList">
302 <pre>public static final <a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a> GERSTEIN</pre>
305 <a name="TAYLOR_GAPS">
308 <ul class="blockList">
309 <li class="blockList">
311 <pre>public static final <a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a> TAYLOR_GAPS</pre>
314 <a name="TAYLOR_NO_GAPS">
317 <ul class="blockList">
318 <li class="blockList">
319 <h4>TAYLOR_NO_GAPS</h4>
320 <pre>public static final <a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a> TAYLOR_NO_GAPS</pre>
326 <ul class="blockList">
327 <li class="blockList">
329 <pre>public static final <a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a> ZVELIBIL</pre>
335 <ul class="blockList">
336 <li class="blockList">
338 <pre>public static final <a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a> KARLIN</pre>
344 <ul class="blockList">
345 <li class="blockList">
347 <pre>public static final <a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a> ARMON</pre>
353 <ul class="blockList">
354 <li class="blockList">
356 <pre>public static final <a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a> THOMPSON</pre>
359 <a name="NOT_LANCET">
362 <ul class="blockList">
363 <li class="blockList">
365 <pre>public static final <a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a> NOT_LANCET</pre>
371 <ul class="blockList">
372 <li class="blockList">
374 <pre>public static final <a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a> MIRNY</pre>
377 <a name="WILLIAMSON">
380 <ul class="blockList">
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383 <pre>public static final <a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a> WILLIAMSON</pre>
389 <ul class="blockList">
390 <li class="blockList">
392 <pre>public static final <a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a> LANDGRAF</pre>
398 <ul class="blockList">
399 <li class="blockList">
401 <pre>public static final <a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a> SANDER</pre>
407 <ul class="blockList">
408 <li class="blockList">
410 <pre>public static final <a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a> VALDAR</pre>
416 <ul class="blockListLast">
417 <li class="blockList">
419 <pre>public static final <a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a> SMERFS</pre>
424 <!-- ============ METHOD DETAIL ========== -->
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436 <pre>public static <a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a>[] values()</pre>
437 <div class="block">Returns an array containing the constants of this enum type, in
438 the order they are declared. This method may be used to iterate
439 over the constants as follows:
441 for (ConservationMethod c : ConservationMethod.values())
442 System.out.println(c);
445 <dt><span class="returnLabel">Returns:</span></dt>
446 <dd>an array containing the constants of this enum type, in the order they are declared</dd>
450 <a name="valueOf-java.lang.String-">
453 <ul class="blockList">
454 <li class="blockList">
456 <pre>public static <a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a> valueOf(java.lang.String name)</pre>
457 <div class="block">Returns the enum constant of this type with the specified name.
458 The string must match <i>exactly</i> an identifier used to declare an
459 enum constant in this type. (Extraneous whitespace characters are
460 not permitted.)</div>
462 <dt><span class="paramLabel">Parameters:</span></dt>
463 <dd><code>name</code> - the name of the enum constant to be returned.</dd>
464 <dt><span class="returnLabel">Returns:</span></dt>
465 <dd>the enum constant with the specified name</dd>
466 <dt><span class="throwsLabel">Throws:</span></dt>
467 <dd><code>java.lang.IllegalArgumentException</code> - if this enum type has no constant with the specified name</dd>
468 <dd><code>java.lang.NullPointerException</code> - if the argument is null</dd>
472 <a name="getMethod-java.lang.String-">
475 <ul class="blockListLast">
476 <li class="blockList">
478 <pre>public static <a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a> getMethod(java.lang.String meth)</pre>
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