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75 <ul class="subNavList">
76 <li>Summary: </li>
77 <li>Nested | </li>
78 <li><a href="#enum.constant.summary">Enum Constants</a> | </li>
79 <li>Field | </li>
80 <li><a href="#method.summary">Method</a></li>
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95 <div class="subTitle">compbio.data.sequence</div>
96 <h2 title="Enum Program" class="title">Enum Program</h2>
98 <div class="contentContainer">
99 <ul class="inheritance">
100 <li>java.lang.Object</li>
102 <ul class="inheritance">
103 <li>java.lang.Enum<<a href="../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a>></li>
105 <ul class="inheritance">
106 <li>compbio.data.sequence.Program</li>
112 <div class="description">
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116 <dt>All Implemented Interfaces:</dt>
117 <dd>java.io.Serializable, java.lang.Comparable<<a href="../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a>></dd>
121 <pre>public enum <span class="typeNameLabel">Program</span>
122 extends java.lang.Enum<<a href="../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a>></pre>
123 <div class="block">The list of programmes that can produce alignments</div>
125 <dt><span class="simpleTagLabel">Author:</span></dt>
131 <div class="summary">
132 <ul class="blockList">
133 <li class="blockList">
134 <!-- =========== ENUM CONSTANT SUMMARY =========== -->
135 <ul class="blockList">
136 <li class="blockList"><a name="enum.constant.summary">
139 <h3>Enum Constant Summary</h3>
140 <table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Enum Constant Summary table, listing enum constants, and an explanation">
141 <caption><span>Enum Constants</span><span class="tabEnd"> </span></caption>
143 <th class="colOne" scope="col">Enum Constant and Description</th>
145 <tr class="altColor">
146 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/Program.html#CLUSTAL">CLUSTAL</a></span></code>
147 <div class="block">ClustalW</div>
150 <tr class="rowColor">
151 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/Program.html#ClustalO">ClustalO</a></span></code>
152 <div class="block">ClustalO</div>
155 <tr class="altColor">
156 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/Program.html#GLprobs">GLprobs</a></span></code>
157 <div class="block">GLprobs</div>
160 <tr class="rowColor">
161 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/Program.html#Mafft">Mafft</a></span></code>
162 <div class="block">Mafft</div>
165 <tr class="altColor">
166 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/Program.html#MSAprobs">MSAprobs</a></span></code>
167 <div class="block">MSAprobs</div>
170 <tr class="rowColor">
171 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/Program.html#Muscle">Muscle</a></span></code>
172 <div class="block">Muscle</div>
175 <tr class="altColor">
176 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/Program.html#Probcons">Probcons</a></span></code>
177 <div class="block">Probcons</div>
180 <tr class="rowColor">
181 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/Program.html#Tcoffee">Tcoffee</a></span></code>
182 <div class="block">Tcoffee</div>
188 <!-- ========== METHOD SUMMARY =========== -->
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193 <h3>Method Summary</h3>
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195 <caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t1" class="tableTab"><span><a href="javascript:show(1);">Static Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption>
197 <th class="colFirst" scope="col">Modifier and Type</th>
198 <th class="colLast" scope="col">Method and Description</th>
200 <tr id="i0" class="altColor">
201 <td class="colFirst"><code>static <a href="../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a></code></td>
202 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/Program.html#valueOf-java.lang.String-">valueOf</a></span>(java.lang.String name)</code>
203 <div class="block">Returns the enum constant of this type with the specified name.</div>
206 <tr id="i1" class="rowColor">
207 <td class="colFirst"><code>static <a href="../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a>[]</code></td>
208 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/Program.html#values--">values</a></span>()</code>
209 <div class="block">Returns an array containing the constants of this enum type, in
210 the order they are declared.</div>
214 <ul class="blockList">
215 <li class="blockList"><a name="methods.inherited.from.class.java.lang.Enum">
218 <h3>Methods inherited from class java.lang.Enum</h3>
219 <code>clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf</code></li>
221 <ul class="blockList">
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225 <h3>Methods inherited from class java.lang.Object</h3>
226 <code>getClass, notify, notifyAll, wait, wait, wait</code></li>
233 <div class="details">
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236 <!-- ============ ENUM CONSTANT DETAIL =========== -->
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241 <h3>Enum Constant Detail</h3>
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246 <li class="blockList">
248 <pre>public static final <a href="../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a> CLUSTAL</pre>
249 <div class="block">ClustalW</div>
255 <ul class="blockList">
256 <li class="blockList">
258 <pre>public static final <a href="../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a> ClustalO</pre>
259 <div class="block">ClustalO</div>
265 <ul class="blockList">
266 <li class="blockList">
268 <pre>public static final <a href="../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a> Mafft</pre>
269 <div class="block">Mafft</div>
275 <ul class="blockList">
276 <li class="blockList">
278 <pre>public static final <a href="../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a> Muscle</pre>
279 <div class="block">Muscle</div>
285 <ul class="blockList">
286 <li class="blockList">
288 <pre>public static final <a href="../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a> Tcoffee</pre>
289 <div class="block">Tcoffee</div>
295 <ul class="blockList">
296 <li class="blockList">
298 <pre>public static final <a href="../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a> Probcons</pre>
299 <div class="block">Probcons</div>
305 <ul class="blockList">
306 <li class="blockList">
308 <pre>public static final <a href="../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a> MSAprobs</pre>
309 <div class="block">MSAprobs</div>
315 <ul class="blockListLast">
316 <li class="blockList">
318 <pre>public static final <a href="../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a> GLprobs</pre>
319 <div class="block">GLprobs</div>
324 <!-- ============ METHOD DETAIL ========== -->
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336 <pre>public static <a href="../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a>[] values()</pre>
337 <div class="block">Returns an array containing the constants of this enum type, in
338 the order they are declared. This method may be used to iterate
339 over the constants as follows:
341 for (Program c : Program.values())
342 System.out.println(c);
345 <dt><span class="returnLabel">Returns:</span></dt>
346 <dd>an array containing the constants of this enum type, in the order they are declared</dd>
350 <a name="valueOf-java.lang.String-">
353 <ul class="blockListLast">
354 <li class="blockList">
356 <pre>public static <a href="../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a> valueOf(java.lang.String name)</pre>
357 <div class="block">Returns the enum constant of this type with the specified name.
358 The string must match <i>exactly</i> an identifier used to declare an
359 enum constant in this type. (Extraneous whitespace characters are
360 not permitted.)</div>
362 <dt><span class="paramLabel">Parameters:</span></dt>
363 <dd><code>name</code> - the name of the enum constant to be returned.</dd>
364 <dt><span class="returnLabel">Returns:</span></dt>
365 <dd>the enum constant with the specified name</dd>
366 <dt><span class="throwsLabel">Throws:</span></dt>
367 <dd><code>java.lang.IllegalArgumentException</code> - if this enum type has no constant with the specified name</dd>
368 <dd><code>java.lang.NullPointerException</code> - if the argument is null</dd>
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