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95 <div class="subTitle">compbio.data.sequence</div>
96 <h2 title="Enum RNAStructReader.AlifoldLine" class="title">Enum RNAStructReader.AlifoldLine</h2>
98 <div class="contentContainer">
99 <ul class="inheritance">
100 <li>java.lang.Object</li>
102 <ul class="inheritance">
103 <li>java.lang.Enum<<a href="../../../compbio/data/sequence/RNAStructReader.AlifoldLine.html" title="enum in compbio.data.sequence">RNAStructReader.AlifoldLine</a>></li>
105 <ul class="inheritance">
106 <li>compbio.data.sequence.RNAStructReader.AlifoldLine</li>
112 <div class="description">
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116 <dt>All Implemented Interfaces:</dt>
117 <dd>java.io.Serializable, java.lang.Comparable<<a href="../../../compbio/data/sequence/RNAStructReader.AlifoldLine.html" title="enum in compbio.data.sequence">RNAStructReader.AlifoldLine</a>></dd>
120 <dt>Enclosing class:</dt>
121 <dd><a href="../../../compbio/data/sequence/RNAStructReader.html" title="class in compbio.data.sequence">RNAStructReader</a></dd>
125 <pre>static enum <span class="typeNameLabel">RNAStructReader.AlifoldLine</span>
126 extends java.lang.Enum<<a href="../../../compbio/data/sequence/RNAStructReader.AlifoldLine.html" title="enum in compbio.data.sequence">RNAStructReader.AlifoldLine</a>></pre>
130 <div class="summary">
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132 <li class="blockList">
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138 <h3>Enum Constant Summary</h3>
139 <table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Enum Constant Summary table, listing enum constants, and an explanation">
140 <caption><span>Enum Constants</span><span class="tabEnd"> </span></caption>
142 <th class="colOne" scope="col">Enum Constant and Description</th>
144 <tr class="altColor">
145 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/RNAStructReader.AlifoldLine.html#alignment">alignment</a></span></code> </td>
147 <tr class="rowColor">
148 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/RNAStructReader.AlifoldLine.html#centStruct">centStruct</a></span></code> </td>
150 <tr class="altColor">
151 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/RNAStructReader.AlifoldLine.html#ensembleFreq">ensembleFreq</a></span></code> </td>
153 <tr class="rowColor">
154 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/RNAStructReader.AlifoldLine.html#freeEnergy">freeEnergy</a></span></code> </td>
156 <tr class="altColor">
157 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/RNAStructReader.AlifoldLine.html#justStruct">justStruct</a></span></code> </td>
159 <tr class="rowColor">
160 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/RNAStructReader.AlifoldLine.html#MEAStruct">MEAStruct</a></span></code> </td>
162 <tr class="altColor">
163 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/RNAStructReader.AlifoldLine.html#mfeStruct">mfeStruct</a></span></code> </td>
165 <tr class="rowColor">
166 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/RNAStructReader.AlifoldLine.html#OTHER">OTHER</a></span></code> </td>
168 <tr class="altColor">
169 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/RNAStructReader.AlifoldLine.html#PStruct">PStruct</a></span></code> </td>
171 <tr class="rowColor">
172 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/RNAStructReader.AlifoldLine.html#stochBTStruct">stochBTStruct</a></span></code> </td>
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187 <th class="colLast" scope="col">Field and Description</th>
189 <tr class="altColor">
190 <td class="colFirst"><code>(package private) java.lang.String</code></td>
191 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/RNAStructReader.AlifoldLine.html#regex">regex</a></span></code> </td>
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208 <tr id="i0" class="altColor">
209 <td class="colFirst"><code>static <a href="../../../compbio/data/sequence/RNAStructReader.AlifoldLine.html" title="enum in compbio.data.sequence">RNAStructReader.AlifoldLine</a></code></td>
210 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/RNAStructReader.AlifoldLine.html#valueOf-java.lang.String-">valueOf</a></span>(java.lang.String name)</code>
211 <div class="block">Returns the enum constant of this type with the specified name.</div>
214 <tr id="i1" class="rowColor">
215 <td class="colFirst"><code>static <a href="../../../compbio/data/sequence/RNAStructReader.AlifoldLine.html" title="enum in compbio.data.sequence">RNAStructReader.AlifoldLine</a>[]</code></td>
216 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/RNAStructReader.AlifoldLine.html#values--">values</a></span>()</code>
217 <div class="block">Returns an array containing the constants of this enum type, in
218 the order they are declared.</div>
222 <ul class="blockList">
223 <li class="blockList"><a name="methods.inherited.from.class.java.lang.Enum">
226 <h3>Methods inherited from class java.lang.Enum</h3>
227 <code>clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf</code></li>
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234 <code>getClass, notify, notifyAll, wait, wait, wait</code></li>
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244 <!-- ============ ENUM CONSTANT DETAIL =========== -->
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256 <pre>public static final <a href="../../../compbio/data/sequence/RNAStructReader.AlifoldLine.html" title="enum in compbio.data.sequence">RNAStructReader.AlifoldLine</a> mfeStruct</pre>
259 <a name="justStruct">
262 <ul class="blockList">
263 <li class="blockList">
265 <pre>public static final <a href="../../../compbio/data/sequence/RNAStructReader.AlifoldLine.html" title="enum in compbio.data.sequence">RNAStructReader.AlifoldLine</a> justStruct</pre>
268 <a name="stochBTStruct">
271 <ul class="blockList">
272 <li class="blockList">
273 <h4>stochBTStruct</h4>
274 <pre>public static final <a href="../../../compbio/data/sequence/RNAStructReader.AlifoldLine.html" title="enum in compbio.data.sequence">RNAStructReader.AlifoldLine</a> stochBTStruct</pre>
280 <ul class="blockList">
281 <li class="blockList">
283 <pre>public static final <a href="../../../compbio/data/sequence/RNAStructReader.AlifoldLine.html" title="enum in compbio.data.sequence">RNAStructReader.AlifoldLine</a> PStruct</pre>
286 <a name="centStruct">
289 <ul class="blockList">
290 <li class="blockList">
292 <pre>public static final <a href="../../../compbio/data/sequence/RNAStructReader.AlifoldLine.html" title="enum in compbio.data.sequence">RNAStructReader.AlifoldLine</a> centStruct</pre>
298 <ul class="blockList">
299 <li class="blockList">
301 <pre>public static final <a href="../../../compbio/data/sequence/RNAStructReader.AlifoldLine.html" title="enum in compbio.data.sequence">RNAStructReader.AlifoldLine</a> MEAStruct</pre>
304 <a name="freeEnergy">
307 <ul class="blockList">
308 <li class="blockList">
310 <pre>public static final <a href="../../../compbio/data/sequence/RNAStructReader.AlifoldLine.html" title="enum in compbio.data.sequence">RNAStructReader.AlifoldLine</a> freeEnergy</pre>
313 <a name="ensembleFreq">
316 <ul class="blockList">
317 <li class="blockList">
318 <h4>ensembleFreq</h4>
319 <pre>public static final <a href="../../../compbio/data/sequence/RNAStructReader.AlifoldLine.html" title="enum in compbio.data.sequence">RNAStructReader.AlifoldLine</a> ensembleFreq</pre>
325 <ul class="blockList">
326 <li class="blockList">
328 <pre>public static final <a href="../../../compbio/data/sequence/RNAStructReader.AlifoldLine.html" title="enum in compbio.data.sequence">RNAStructReader.AlifoldLine</a> alignment</pre>
334 <ul class="blockListLast">
335 <li class="blockList">
337 <pre>public static final <a href="../../../compbio/data/sequence/RNAStructReader.AlifoldLine.html" title="enum in compbio.data.sequence">RNAStructReader.AlifoldLine</a> OTHER</pre>
342 <!-- ============ FIELD DETAIL =========== -->
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347 <h3>Field Detail</h3>
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352 <li class="blockList">
354 <pre>java.lang.String regex</pre>
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364 <h3>Method Detail</h3>
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371 <pre>public static <a href="../../../compbio/data/sequence/RNAStructReader.AlifoldLine.html" title="enum in compbio.data.sequence">RNAStructReader.AlifoldLine</a>[] values()</pre>
372 <div class="block">Returns an array containing the constants of this enum type, in
373 the order they are declared. This method may be used to iterate
374 over the constants as follows:
376 for (RNAStructReader.AlifoldLine c : RNAStructReader.AlifoldLine.values())
377 System.out.println(c);
380 <dt><span class="returnLabel">Returns:</span></dt>
381 <dd>an array containing the constants of this enum type, in the order they are declared</dd>
385 <a name="valueOf-java.lang.String-">
388 <ul class="blockListLast">
389 <li class="blockList">
391 <pre>public static <a href="../../../compbio/data/sequence/RNAStructReader.AlifoldLine.html" title="enum in compbio.data.sequence">RNAStructReader.AlifoldLine</a> valueOf(java.lang.String name)</pre>
392 <div class="block">Returns the enum constant of this type with the specified name.
393 The string must match <i>exactly</i> an identifier used to declare an
394 enum constant in this type. (Extraneous whitespace characters are
395 not permitted.)</div>
397 <dt><span class="paramLabel">Parameters:</span></dt>
398 <dd><code>name</code> - the name of the enum constant to be returned.</dd>
399 <dt><span class="returnLabel">Returns:</span></dt>
400 <dd>the enum constant with the specified name</dd>
401 <dt><span class="throwsLabel">Throws:</span></dt>
402 <dd><code>java.lang.IllegalArgumentException</code> - if this enum type has no constant with the specified name</dd>
403 <dd><code>java.lang.NullPointerException</code> - if the argument is null</dd>
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