website/docs/full_javadoc/compbio/data/sequence/RNAStructScoreManager.html

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  76 <li>Summary:&nbsp;</li>
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  96 <h2 title="Class RNAStructScoreManager" class="title">Class RNAStructScoreManager</h2>
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 100 <li>java.lang.Object</li>
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 106 <li>compbio.data.sequence.RNAStructScoreManager</li>
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 117 <pre>public class <span class="typeNameLabel">RNAStructScoreManager</span>
 118 extends <a href="../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a></pre>
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 135 <h3>Nested classes/interfaces inherited from class&nbsp;compbio.data.sequence.<a href="../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a></h3>
 136 <code><a href="../../../compbio/data/sequence/ScoreManager.ScoreHolder.html" title="class in compbio.data.sequence">ScoreManager.ScoreHolder</a></code></li>
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 150 <h3>Fields inherited from class&nbsp;compbio.data.sequence.<a href="../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a></h3>
 151 <code><a href="../../../compbio/data/sequence/ScoreManager.html#seqScores">seqScores</a>, <a href="../../../compbio/data/sequence/ScoreManager.html#SINGLE_ENTRY_KEY">SINGLE_ENTRY_KEY</a></code></li>
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 168 <td class="colFirst"><code>private </code></td>
 169 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/RNAStructScoreManager.html#RNAStructScoreManager--">RNAStructScoreManager</a></span>()</code>&nbsp;</td>
 170 </tr>
 171 <tr class="rowColor">
 172 <td class="colFirst"><code>&nbsp;</code></td>
 173 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/RNAStructScoreManager.html#RNAStructScoreManager-java.util.List-java.util.List-">RNAStructScoreManager</a></span>(java.util.List&lt;java.lang.String&gt;&nbsp;structs,
 174                      java.util.List&lt;java.util.TreeSet&lt;<a href="../../../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</a>&gt;&gt;&nbsp;data)</code>&nbsp;</td>
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 187 <tr>
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 191 <tr id="i0" class="altColor">
 192 <td class="colFirst"><code>boolean</code></td>
 193 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/RNAStructScoreManager.html#equals-java.lang.Object-">equals</a></span>(java.lang.Object&nbsp;obj)</code>&nbsp;</td>
 194 </tr>
 195 <tr id="i1" class="rowColor">
 196 <td class="colFirst"><code>java.util.List&lt;java.util.TreeSet&lt;<a href="../../../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</a>&gt;&gt;</code></td>
 197 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/RNAStructScoreManager.html#getData--">getData</a></span>()</code>&nbsp;</td>
 198 </tr>
 199 <tr id="i2" class="altColor">
 200 <td class="colFirst"><code>java.util.List&lt;java.lang.String&gt;</code></td>
 201 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/RNAStructScoreManager.html#getStructs--">getStructs</a></span>()</code>&nbsp;</td>
 202 </tr>
 203 <tr id="i3" class="rowColor">
 204 <td class="colFirst"><code>static <a href="../../../compbio/data/sequence/RNAStructScoreManager.html" title="class in compbio.data.sequence">RNAStructScoreManager</a></code></td>
 205 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/RNAStructScoreManager.html#newInstance-java.util.List-java.util.List-">newInstance</a></span>(java.util.List&lt;java.lang.String&gt;&nbsp;structs,
 206            java.util.List&lt;java.util.TreeSet&lt;<a href="../../../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</a>&gt;&gt;&nbsp;data)</code>&nbsp;</td>
 207 </tr>
 208 <tr id="i4" class="altColor">
 209 <td class="colFirst"><code>java.lang.String</code></td>
 210 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/RNAStructScoreManager.html#toString--">toString</a></span>()</code>&nbsp;</td>
 211 </tr>
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 215 <!--   -->
 216 </a>
 217 <h3>Methods inherited from class&nbsp;compbio.data.sequence.<a href="../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a></h3>
 218 <code><a href="../../../compbio/data/sequence/ScoreManager.html#asMap--">asMap</a>, <a href="../../../compbio/data/sequence/ScoreManager.html#asSet--">asSet</a>, <a href="../../../compbio/data/sequence/ScoreManager.html#getAnnotationForSequence-java.lang.String-">getAnnotationForSequence</a>, <a href="../../../compbio/data/sequence/ScoreManager.html#getNumberOfSeq--">getNumberOfSeq</a>, <a href="../../../compbio/data/sequence/ScoreManager.html#hashCode--">hashCode</a>, <a href="../../../compbio/data/sequence/ScoreManager.html#newInstance-java.util.Map-">newInstance</a>, <a href="../../../compbio/data/sequence/ScoreManager.html#newInstanceSingleScore-java.util.Map-">newInstanceSingleScore</a>, <a href="../../../compbio/data/sequence/ScoreManager.html#newInstanceSingleSequence-java.util.Set-">newInstanceSingleSequence</a>, <a href="../../../compbio/data/sequence/ScoreManager.html#writeOut-java.io.Writer-">writeOut</a></code></li>
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 222 <!--   -->
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 224 <h3>Methods inherited from class&nbsp;java.lang.Object</h3>
 225 <code>clone, finalize, getClass, notify, notifyAll, wait, wait, wait</code></li>
 226 </ul>
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 235 <!-- ========= CONSTRUCTOR DETAIL ======== -->
 236 <ul class="blockList">
 237 <li class="blockList"><a name="constructor.detail">
 238 <!--   -->
 239 </a>
 240 <h3>Constructor Detail</h3>
 241 <a name="RNAStructScoreManager--">
 242 <!--   -->
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 244 <ul class="blockList">
 245 <li class="blockList">
 246 <h4>RNAStructScoreManager</h4>
 247 <pre>private&nbsp;RNAStructScoreManager()</pre>
 248 </li>
 249 </ul>
 250 <a name="RNAStructScoreManager-java.util.List-java.util.List-">
 251 <!--   -->
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 254 <li class="blockList">
 255 <h4>RNAStructScoreManager</h4>
 256 <pre>public&nbsp;RNAStructScoreManager(java.util.List&lt;java.lang.String&gt;&nbsp;structs,
 257                              java.util.List&lt;java.util.TreeSet&lt;<a href="../../../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</a>&gt;&gt;&nbsp;data)</pre>
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 273 <h4>newInstance</h4>
 274 <pre>public static&nbsp;<a href="../../../compbio/data/sequence/RNAStructScoreManager.html" title="class in compbio.data.sequence">RNAStructScoreManager</a>&nbsp;newInstance(java.util.List&lt;java.lang.String&gt;&nbsp;structs,
 275                                                 java.util.List&lt;java.util.TreeSet&lt;<a href="../../../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</a>&gt;&gt;&nbsp;data)</pre>
 276 </li>
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 278 <a name="getStructs--">
 279 <!--   -->
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 282 <li class="blockList">
 283 <h4>getStructs</h4>
 284 <pre>public&nbsp;java.util.List&lt;java.lang.String&gt;&nbsp;getStructs()</pre>
 285 </li>
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 288 <!--   -->
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 290 <ul class="blockList">
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 292 <h4>getData</h4>
 293 <pre>public&nbsp;java.util.List&lt;java.util.TreeSet&lt;<a href="../../../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</a>&gt;&gt;&nbsp;getData()</pre>
 294 </li>
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 316 <dl>
 317 <dt><span class="overrideSpecifyLabel">Overrides:</span></dt>
 318 <dd><code><a href="../../../compbio/data/sequence/ScoreManager.html#equals-java.lang.Object-">equals</a></code>&nbsp;in class&nbsp;<code><a href="../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a></code></dd>
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