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76 <li>Summary: </li>
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95 <div class="subTitle">compbio.data.sequence</div>
96 <h2 title="Class ScoreManager.ScoreHolder" class="title">Class ScoreManager.ScoreHolder</h2>
98 <div class="contentContainer">
99 <ul class="inheritance">
100 <li>java.lang.Object</li>
102 <ul class="inheritance">
103 <li>compbio.data.sequence.ScoreManager.ScoreHolder</li>
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111 <dt>Enclosing class:</dt>
112 <dd><a href="../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a></dd>
116 <pre>public static class <span class="typeNameLabel">ScoreManager.ScoreHolder</span>
117 extends java.lang.Object</pre>
121 <div class="summary">
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129 <h3>Field Summary</h3>
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131 <caption><span>Fields</span><span class="tabEnd"> </span></caption>
133 <th class="colFirst" scope="col">Modifier and Type</th>
134 <th class="colLast" scope="col">Field and Description</th>
136 <tr class="altColor">
137 <td class="colFirst"><code>java.lang.String</code></td>
138 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ScoreManager.ScoreHolder.html#id">id</a></span></code> </td>
140 <tr class="rowColor">
141 <td class="colFirst"><code>java.util.TreeSet<<a href="../../../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</a>></code></td>
142 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ScoreManager.ScoreHolder.html#scores">scores</a></span></code> </td>
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156 <th class="colFirst" scope="col">Modifier</th>
157 <th class="colLast" scope="col">Constructor and Description</th>
159 <tr class="altColor">
160 <td class="colFirst"><code>private </code></td>
161 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ScoreManager.ScoreHolder.html#ScoreHolder--">ScoreHolder</a></span>()</code> </td>
163 <tr class="rowColor">
164 <td class="colFirst"><code>(package private)</code></td>
165 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ScoreManager.ScoreHolder.html#ScoreHolder-java.lang.String-java.util.Set-">ScoreHolder</a></span>(java.lang.String id,
166 java.util.Set<<a href="../../../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</a>> scores)</code> </td>
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178 <caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption>
180 <th class="colFirst" scope="col">Modifier and Type</th>
181 <th class="colLast" scope="col">Method and Description</th>
183 <tr id="i0" class="altColor">
184 <td class="colFirst"><code>boolean</code></td>
185 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ScoreManager.ScoreHolder.html#equals-java.lang.Object-">equals</a></span>(java.lang.Object obj)</code> </td>
187 <tr id="i1" class="rowColor">
188 <td class="colFirst"><code>int</code></td>
189 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ScoreManager.ScoreHolder.html#getNumberOfScores--">getNumberOfScores</a></span>()</code> </td>
191 <tr id="i2" class="altColor">
192 <td class="colFirst"><code><a href="../../../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</a></code></td>
193 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ScoreManager.ScoreHolder.html#getScoreByMethod-java.lang.Enum-">getScoreByMethod</a></span>(java.lang.Enum<?> method)</code> </td>
195 <tr id="i3" class="rowColor">
196 <td class="colFirst"><code><a href="../../../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</a></code></td>
197 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ScoreManager.ScoreHolder.html#getScoreByMethod-java.lang.String-">getScoreByMethod</a></span>(java.lang.String method)</code> </td>
199 <tr id="i4" class="altColor">
200 <td class="colFirst"><code>int</code></td>
201 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ScoreManager.ScoreHolder.html#hashCode--">hashCode</a></span>()</code> </td>
203 <tr id="i5" class="rowColor">
204 <td class="colFirst"><code>void</code></td>
205 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ScoreManager.ScoreHolder.html#writeOut-java.io.Writer-">writeOut</a></span>(java.io.Writer writer)</code> </td>
208 <ul class="blockList">
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212 <h3>Methods inherited from class java.lang.Object</h3>
213 <code>clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait</code></li>
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235 <pre>public java.lang.String id</pre>
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242 <li class="blockList">
244 <pre>public java.util.TreeSet<<a href="../../../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</a>> scores</pre>
249 <!-- ========= CONSTRUCTOR DETAIL ======== -->
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251 <li class="blockList"><a name="constructor.detail">
254 <h3>Constructor Detail</h3>
255 <a name="ScoreHolder--">
258 <ul class="blockList">
259 <li class="blockList">
261 <pre>private ScoreHolder()</pre>
264 <a name="ScoreHolder-java.lang.String-java.util.Set-">
267 <ul class="blockListLast">
268 <li class="blockList">
270 <pre>ScoreHolder(java.lang.String id,
271 java.util.Set<<a href="../../../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</a>> scores)</pre>
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288 <pre>public void writeOut(java.io.Writer writer)
289 throws java.io.IOException</pre>
291 <dt><span class="throwsLabel">Throws:</span></dt>
292 <dd><code>java.io.IOException</code></dd>
296 <a name="getScoreByMethod-java.lang.Enum-">
299 <ul class="blockList">
300 <li class="blockList">
301 <h4>getScoreByMethod</h4>
302 <pre>public <a href="../../../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</a> getScoreByMethod(java.lang.Enum<?> method)</pre>
305 <a name="getScoreByMethod-java.lang.String-">
308 <ul class="blockList">
309 <li class="blockList">
310 <h4>getScoreByMethod</h4>
311 <pre>public <a href="../../../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</a> getScoreByMethod(java.lang.String method)</pre>
314 <a name="getNumberOfScores--">
317 <ul class="blockList">
318 <li class="blockList">
319 <h4>getNumberOfScores</h4>
320 <pre>public int getNumberOfScores()</pre>
323 <a name="hashCode--">
326 <ul class="blockList">
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329 <pre>public int hashCode()</pre>
331 <dt><span class="overrideSpecifyLabel">Overrides:</span></dt>
332 <dd><code>hashCode</code> in class <code>java.lang.Object</code></dd>
336 <a name="equals-java.lang.Object-">
339 <ul class="blockListLast">
340 <li class="blockList">
342 <pre>public boolean equals(java.lang.Object obj)</pre>
344 <dt><span class="overrideSpecifyLabel">Overrides:</span></dt>
345 <dd><code>equals</code> in class <code>java.lang.Object</code></dd>
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