website/docs/full_javadoc/compbio/data/sequence/ScoreManager.ScoreHolder.html

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  96 <h2 title="Class ScoreManager.ScoreHolder" class="title">Class ScoreManager.ScoreHolder</h2>
  97 </div>
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  99 <ul class="inheritance">
 100 <li>java.lang.Object</li>
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 102 <ul class="inheritance">
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 111 <dt>Enclosing class:</dt>
 112 <dd><a href="../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a></dd>
 113 </dl>
 114 <hr>
 115 <br>
 116 <pre>public static class <span class="typeNameLabel">ScoreManager.ScoreHolder</span>
 117 extends java.lang.Object</pre>
 118 </li>
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 132 <tr>
 133 <th class="colFirst" scope="col">Modifier and Type</th>
 134 <th class="colLast" scope="col">Field and Description</th>
 135 </tr>
 136 <tr class="altColor">
 137 <td class="colFirst"><code>java.lang.String</code></td>
 138 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ScoreManager.ScoreHolder.html#id">id</a></span></code>&nbsp;</td>
 139 </tr>
 140 <tr class="rowColor">
 141 <td class="colFirst"><code>java.util.TreeSet&lt;<a href="../../../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</a>&gt;</code></td>
 142 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ScoreManager.ScoreHolder.html#scores">scores</a></span></code>&nbsp;</td>
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 155 <tr>
 156 <th class="colFirst" scope="col">Modifier</th>
 157 <th class="colLast" scope="col">Constructor and Description</th>
 158 </tr>
 159 <tr class="altColor">
 160 <td class="colFirst"><code>private </code></td>
 161 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ScoreManager.ScoreHolder.html#ScoreHolder--">ScoreHolder</a></span>()</code>&nbsp;</td>
 162 </tr>
 163 <tr class="rowColor">
 164 <td class="colFirst"><code>(package private)</code></td>
 165 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ScoreManager.ScoreHolder.html#ScoreHolder-java.lang.String-java.util.Set-">ScoreHolder</a></span>(java.lang.String&nbsp;id,
 166            java.util.Set&lt;<a href="../../../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</a>&gt;&nbsp;scores)</code>&nbsp;</td>
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 183 <tr id="i0" class="altColor">
 184 <td class="colFirst"><code>boolean</code></td>
 185 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ScoreManager.ScoreHolder.html#equals-java.lang.Object-">equals</a></span>(java.lang.Object&nbsp;obj)</code>&nbsp;</td>
 186 </tr>
 187 <tr id="i1" class="rowColor">
 188 <td class="colFirst"><code>int</code></td>
 189 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ScoreManager.ScoreHolder.html#getNumberOfScores--">getNumberOfScores</a></span>()</code>&nbsp;</td>
 190 </tr>
 191 <tr id="i2" class="altColor">
 192 <td class="colFirst"><code><a href="../../../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</a></code></td>
 193 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ScoreManager.ScoreHolder.html#getScoreByMethod-java.lang.Enum-">getScoreByMethod</a></span>(java.lang.Enum&lt;?&gt;&nbsp;method)</code>&nbsp;</td>
 194 </tr>
 195 <tr id="i3" class="rowColor">
 196 <td class="colFirst"><code><a href="../../../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</a></code></td>
 197 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ScoreManager.ScoreHolder.html#getScoreByMethod-java.lang.String-">getScoreByMethod</a></span>(java.lang.String&nbsp;method)</code>&nbsp;</td>
 198 </tr>
 199 <tr id="i4" class="altColor">
 200 <td class="colFirst"><code>int</code></td>
 201 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ScoreManager.ScoreHolder.html#hashCode--">hashCode</a></span>()</code>&nbsp;</td>
 202 </tr>
 203 <tr id="i5" class="rowColor">
 204 <td class="colFirst"><code>void</code></td>
 205 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ScoreManager.ScoreHolder.html#writeOut-java.io.Writer-">writeOut</a></span>(java.io.Writer&nbsp;writer)</code>&nbsp;</td>
 206 </tr>
 207 </table>
 208 <ul class="blockList">
 209 <li class="blockList"><a name="methods.inherited.from.class.java.lang.Object">
 210 <!--   -->
 211 </a>
 212 <h3>Methods inherited from class&nbsp;java.lang.Object</h3>
 213 <code>clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait</code></li>
 214 </ul>
 215 </li>
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 226 <!--   -->
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 228 <h3>Field Detail</h3>
 229 <a name="id">
 230 <!--   -->
 231 </a>
 232 <ul class="blockList">
 233 <li class="blockList">
 234 <h4>id</h4>
 235 <pre>public&nbsp;java.lang.String id</pre>
 236 </li>
 237 </ul>
 238 <a name="scores">
 239 <!--   -->
 240 </a>
 241 <ul class="blockListLast">
 242 <li class="blockList">
 243 <h4>scores</h4>
 244 <pre>public&nbsp;java.util.TreeSet&lt;<a href="../../../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</a>&gt; scores</pre>
 245 </li>
 246 </ul>
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 249 <!-- ========= CONSTRUCTOR DETAIL ======== -->
 250 <ul class="blockList">
 251 <li class="blockList"><a name="constructor.detail">
 252 <!--   -->
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 254 <h3>Constructor Detail</h3>
 255 <a name="ScoreHolder--">
 256 <!--   -->
 257 </a>
 258 <ul class="blockList">
 259 <li class="blockList">
 260 <h4>ScoreHolder</h4>
 261 <pre>private&nbsp;ScoreHolder()</pre>
 262 </li>
 263 </ul>
 264 <a name="ScoreHolder-java.lang.String-java.util.Set-">
 265 <!--   -->
 266 </a>
 267 <ul class="blockListLast">
 268 <li class="blockList">
 269 <h4>ScoreHolder</h4>
 270 <pre>ScoreHolder(java.lang.String&nbsp;id,
 271             java.util.Set&lt;<a href="../../../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</a>&gt;&nbsp;scores)</pre>
 272 </li>
 273 </ul>
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 276 <!-- ============ METHOD DETAIL ========== -->
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 283 <!--   -->
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 285 <ul class="blockList">
 286 <li class="blockList">
 287 <h4>writeOut</h4>
 288 <pre>public&nbsp;void&nbsp;writeOut(java.io.Writer&nbsp;writer)
 289               throws java.io.IOException</pre>
 290 <dl>
 291 <dt><span class="throwsLabel">Throws:</span></dt>
 292 <dd><code>java.io.IOException</code></dd>
 293 </dl>
 294 </li>
 295 </ul>
 296 <a name="getScoreByMethod-java.lang.Enum-">
 297 <!--   -->
 298 </a>
 299 <ul class="blockList">
 300 <li class="blockList">
 301 <h4>getScoreByMethod</h4>
 302 <pre>public&nbsp;<a href="../../../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</a>&nbsp;getScoreByMethod(java.lang.Enum&lt;?&gt;&nbsp;method)</pre>
 303 </li>
 304 </ul>
 305 <a name="getScoreByMethod-java.lang.String-">
 306 <!--   -->
 307 </a>
 308 <ul class="blockList">
 309 <li class="blockList">
 310 <h4>getScoreByMethod</h4>
 311 <pre>public&nbsp;<a href="../../../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</a>&nbsp;getScoreByMethod(java.lang.String&nbsp;method)</pre>
 312 </li>
 313 </ul>
 314 <a name="getNumberOfScores--">
 315 <!--   -->
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 317 <ul class="blockList">
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 319 <h4>getNumberOfScores</h4>
 320 <pre>public&nbsp;int&nbsp;getNumberOfScores()</pre>
 321 </li>
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 323 <a name="hashCode--">
 324 <!--   -->
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 329 <pre>public&nbsp;int&nbsp;hashCode()</pre>
 330 <dl>
 331 <dt><span class="overrideSpecifyLabel">Overrides:</span></dt>
 332 <dd><code>hashCode</code>&nbsp;in class&nbsp;<code>java.lang.Object</code></dd>
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 342 <pre>public&nbsp;boolean&nbsp;equals(java.lang.Object&nbsp;obj)</pre>
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 345 <dd><code>equals</code>&nbsp;in class&nbsp;<code>java.lang.Object</code></dd>
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