1 <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
5 <!-- Generated by javadoc (1.8.0_121) on Fri Apr 21 15:32:51 BST 2017 -->
6 <title>Uses of Class compbio.data.sequence.Program</title>
7 <meta name="date" content="2017-04-21">
8 <link rel="stylesheet" type="text/css" href="../../../../stylesheet.css" title="Style">
9 <script type="text/javascript" src="../../../../script.js"></script>
12 <script type="text/javascript"><!--
14 if (location.href.indexOf('is-external=true') == -1) {
15 parent.document.title="Uses of Class compbio.data.sequence.Program";
23 <div>JavaScript is disabled on your browser.</div>
25 <!-- ========= START OF TOP NAVBAR ======= -->
26 <div class="topNav"><a name="navbar.top">
29 <div class="skipNav"><a href="#skip.navbar.top" title="Skip navigation links">Skip navigation links</a></div>
30 <a name="navbar.top.firstrow">
33 <ul class="navList" title="Navigation">
34 <li><a href="../../../../overview-summary.html">Overview</a></li>
35 <li><a href="../package-summary.html">Package</a></li>
36 <li><a href="../../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Class</a></li>
37 <li class="navBarCell1Rev">Use</li>
38 <li><a href="../../../../overview-tree.html">Tree</a></li>
39 <li><a href="../../../../deprecated-list.html">Deprecated</a></li>
40 <li><a href="../../../../index-files/index-1.html">Index</a></li>
41 <li><a href="../../../../help-doc.html">Help</a></li>
50 <li><a href="../../../../index.html?compbio/data/sequence/class-use/Program.html" target="_top">Frames</a></li>
51 <li><a href="Program.html" target="_top">No Frames</a></li>
53 <ul class="navList" id="allclasses_navbar_top">
54 <li><a href="../../../../allclasses-noframe.html">All Classes</a></li>
57 <script type="text/javascript"><!--
58 allClassesLink = document.getElementById("allclasses_navbar_top");
60 allClassesLink.style.display = "block";
63 allClassesLink.style.display = "none";
68 <a name="skip.navbar.top">
71 <!-- ========= END OF TOP NAVBAR ========= -->
73 <h2 title="Uses of Class compbio.data.sequence.Program" class="title">Uses of Class<br>compbio.data.sequence.Program</h2>
75 <div class="classUseContainer">
76 <ul class="blockList">
77 <li class="blockList">
78 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing packages, and an explanation">
79 <caption><span>Packages that use <a href="../../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a></span><span class="tabEnd"> </span></caption>
81 <th class="colFirst" scope="col">Package</th>
82 <th class="colLast" scope="col">Description</th>
86 <td class="colFirst"><a href="#compbio.data.sequence">compbio.data.sequence</a></td>
88 <div class="block">A data model for multiple sequence alignment web services and utility methods
89 that work on the objects of this model.</div>
95 <li class="blockList">
96 <ul class="blockList">
97 <li class="blockList"><a name="compbio.data.sequence">
100 <h3>Uses of <a href="../../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a> in <a href="../../../../compbio/data/sequence/package-summary.html">compbio.data.sequence</a></h3>
101 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing fields, and an explanation">
102 <caption><span>Fields in <a href="../../../../compbio/data/sequence/package-summary.html">compbio.data.sequence</a> declared as <a href="../../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a></span><span class="tabEnd"> </span></caption>
104 <th class="colFirst" scope="col">Modifier and Type</th>
105 <th class="colLast" scope="col">Field and Description</th>
108 <tr class="altColor">
109 <td class="colFirst"><code>private <a href="../../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a></code></td>
110 <td class="colLast"><span class="typeNameLabel">AlignmentMetadata.</span><code><span class="memberNameLink"><a href="../../../../compbio/data/sequence/AlignmentMetadata.html#program">program</a></span></code> </td>
114 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation">
115 <caption><span>Methods in <a href="../../../../compbio/data/sequence/package-summary.html">compbio.data.sequence</a> that return <a href="../../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a></span><span class="tabEnd"> </span></caption>
117 <th class="colFirst" scope="col">Modifier and Type</th>
118 <th class="colLast" scope="col">Method and Description</th>
121 <tr class="altColor">
122 <td class="colFirst"><code><a href="../../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a></code></td>
123 <td class="colLast"><span class="typeNameLabel">AlignmentMetadata.</span><code><span class="memberNameLink"><a href="../../../../compbio/data/sequence/AlignmentMetadata.html#getProgram--">getProgram</a></span>()</code> </td>
125 <tr class="rowColor">
126 <td class="colFirst"><code>static <a href="../../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a></code></td>
127 <td class="colLast"><span class="typeNameLabel">Program.</span><code><span class="memberNameLink"><a href="../../../../compbio/data/sequence/Program.html#valueOf-java.lang.String-">valueOf</a></span>(java.lang.String name)</code>
128 <div class="block">Returns the enum constant of this type with the specified name.</div>
131 <tr class="altColor">
132 <td class="colFirst"><code>static <a href="../../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a>[]</code></td>
133 <td class="colLast"><span class="typeNameLabel">Program.</span><code><span class="memberNameLink"><a href="../../../../compbio/data/sequence/Program.html#values--">values</a></span>()</code>
134 <div class="block">Returns an array containing the constants of this enum type, in
135 the order they are declared.</div>
140 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing constructors, and an explanation">
141 <caption><span>Constructors in <a href="../../../../compbio/data/sequence/package-summary.html">compbio.data.sequence</a> with parameters of type <a href="../../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a></span><span class="tabEnd"> </span></caption>
143 <th class="colOne" scope="col">Constructor and Description</th>
146 <tr class="altColor">
147 <td class="colLast"><code><span class="memberNameLink"><a href="../../../../compbio/data/sequence/Alignment.html#Alignment-java.util.List-compbio.data.sequence.Program-char-">Alignment</a></span>(java.util.List<<a href="../../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</a>> sequences,
148 <a href="../../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a> program,
149 char gapchar)</code> </td>
151 <tr class="rowColor">
152 <td class="colLast"><code><span class="memberNameLink"><a href="../../../../compbio/data/sequence/AlignmentMetadata.html#AlignmentMetadata-compbio.data.sequence.Program-char-">AlignmentMetadata</a></span>(<a href="../../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a> program,
153 char gapchar)</code> </td>
162 <!-- ======= START OF BOTTOM NAVBAR ====== -->
163 <div class="bottomNav"><a name="navbar.bottom">
166 <div class="skipNav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div>
167 <a name="navbar.bottom.firstrow">
170 <ul class="navList" title="Navigation">
171 <li><a href="../../../../overview-summary.html">Overview</a></li>
172 <li><a href="../package-summary.html">Package</a></li>
173 <li><a href="../../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Class</a></li>
174 <li class="navBarCell1Rev">Use</li>
175 <li><a href="../../../../overview-tree.html">Tree</a></li>
176 <li><a href="../../../../deprecated-list.html">Deprecated</a></li>
177 <li><a href="../../../../index-files/index-1.html">Index</a></li>
178 <li><a href="../../../../help-doc.html">Help</a></li>
187 <li><a href="../../../../index.html?compbio/data/sequence/class-use/Program.html" target="_top">Frames</a></li>
188 <li><a href="Program.html" target="_top">No Frames</a></li>
190 <ul class="navList" id="allclasses_navbar_bottom">
191 <li><a href="../../../../allclasses-noframe.html">All Classes</a></li>
194 <script type="text/javascript"><!--
195 allClassesLink = document.getElementById("allclasses_navbar_bottom");
197 allClassesLink.style.display = "block";
200 allClassesLink.style.display = "none";
205 <a name="skip.navbar.bottom">
208 <!-- ======== END OF BOTTOM NAVBAR ======= -->